Gene detail information of Glyur000009s00001432 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03415.2 | 5.00E-177 | Protein phosphatase 2C family protein |
| NR | XP_003543347.1 | 0 | PREDICTED: probable protein phosphatase 2C 52-like [Glycine max] |
| Swissprot | tr|Q8GY60|P2C52_ARATH | 0 | Probable protein phosphatase 2C 52 |
| trEMBL | tr|I1M3V2|I1M3V2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G37520.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 329994 | 334648 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001432.1 | PF00481.16 | PP2C | 158 | 352 | 9.00E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.748 |
| SRR1783600 | control | 3.803 |
| SRR1783602 | moderate drought stress | 3.701 |
| SRR1811619 | moderate drought stress | 3.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.679 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.717 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 32.064 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.797 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.736 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.487 |
| SRR2868004 | Drought Stress (root) | 32.578 |
| SRR2967015 | Control (root) | 52.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.087 |
| SRR9715740 | Leaf | 9.703 |
| SRR9715741 | Leaf | 12.698 |
| SRR9715739 | Root | 1.142 |
| SRR9715742 | Root | 4.913 |
| SRR9715743 | Root | 5.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.291 |
| SRR8749028 | MeJA induced 9h | 59.354 |
| SRR8749029 | MeJA induced 9h | 39.503 |
| SRR8749030 | Uninduced | 66.096 |
| SRR8749031 | Uninduced | 58.595 |
| SRR8749032 | Uninduced | 51.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.746 |
| SRR8400027 | Control - Root | 19.063 |