Gene detail

Gene detail information of Glyur000009s00001420

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03530.1	1.00E-60	nuclear assembly factor 1
NR	XP_004487320.1	7.38E-169	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like [Cicer arietinum]
trEMBL	tr\|V7AHC2\|V7AHC2_PHAVU	4.00E-157	Uncharacterized protein {ECO:0000313\|EMBL:ESW04635.1}

Sequence

Transcript Sequence

>Glyur000009s00001420.1
CGCGGGCAGGGTTTAAGGAGCGATAAGAGTTTCCAAAAAAACAAAACCGAAAACCCCTTGGTTGCGGATATGGAAATCGCGCTCTTCCNATTATTAATTTCAATCGTGTGGGTTCCCAACCCTAATTTCGCTGCGCATGGAGATGGTGGACGTTGTTGAACAAGAAGACCCTCTTCAACTCAACGACCTCGCCCTCGCCCTCGCCGATTCCTTCATCAATTTCGATTATGTCCCTGACATCCCCGACCCAATTGCGGTCGGGTCCGGGTCTTCCCATTCGGATCCTCCTATCAATTCTGCTACTCTTGAGCAAGCGATTGAGAAAATCAGCTTAGTTGAAAGTGGAATTGAGGGAAAGGGAAATGGCGATGTTGTTGTTAGAGCTGCTGAGAGTGACATTATTAATATCGCTAATGATCATGAGAGTCAGAGTTCTCAGCCTGAGACTGCCACCACCGCAACGACGTCGTCGTCGTCTTCAACTTCCTCCTCAACTACCGCCACCAGCAGTGACAGCGATGAGAAAAGCGAATTGGAAGAAGGTGAGATAGTGGAATCTGATCCATCCGTTGTTGTTGATGATGATGNTGGCGAAGAAGGTTCAGAGGATATTACTAGTTGGGACATTGTTGATGATGATGATGATGATGATCCGTCTGCTGGAAGACCCGTTAGGTCACAGAACGAGCTTGAGATTCTTCCTTTGGTTCCTCCTGTGAATGTGACATTAGGACAACATCATCAAATGTTGCCGGTNGGAGTTGTTACATCGATTCTTGGTGCTCGAGTCGTTGNGGAAGGGGTAGAGAAGCATGAGCCTCTTAACGAGGGTTCTATTCTCTGGATGACTGAAAGCCGAACACCGCTAGGATNAATTGATGAGATCTTTGGACCTGTCAAAAATCCTTATTATATTGTGAGATACAATTCTGAAAATGAAGTCCCTGAAGGGATCCGTGGGGGAACTTTGATTTCTTTTGTTCCAGAATTTGCGGATCATGTGCTTAATAACAAGGATCTTTACGAGAAAGGATATGATGNATCTGGTCCGAATGATGAAGAGGTGTCTGAGGAAGCAGAATTTTCAGATGATGAGAAAGAGGCCGAATACAACAGAATNCAGAAAATGACCAAGAGAGGCATGAACAATCAAAATCGTGAGAAGAGGAAAAACAACNGAGAGAAAGTTCCACCAAGAGATGGTTTTGTCCCGAGATTCCCCCGTGCACCTGCCACGCCATCTCTTGATCATGGACATTGTTCACCTATTTCAGGCATTGGACAAGGCCCTTTAGGTGCAACTAACCGAAATCCCCCATTTTCTCCTGCAAATGCAGGTCCTAGCTTAGCTACAAGTGGATTTTGGTCAAACGGGACAACACTTCCGCNGCAACAGTCTGCAGTGCTTCCTAATGGATTTCCTACAAATGGTGTATCNTGGTACCCAGGAAATACTCACATTTCTCATCAGTTGCCAGTACCAGNAGTTCCATTTCAACAGCAGTTAAATCCCAACCATGGGTTTCCTCCAGCACCTATATATCCTGGAGTACAGCCCAATATATTTGCACAACCCATGCATGCACAGGGACCCATGAATCAAAACCAAATTACATTTGGATTGAGCTCACCCTTCCCGCAGATTCAGCCACCCATAAATTTTCATTCCAGTTCTATTTCAGGCAATCAGCATGCTCCACATCAATATAATCCAGGTGCTTCTGCTTACCGTGGGAGGAGAACATTTCATCGAGGGTCTAGTAGAGGCTGGCGACCAGCCAGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	263592	266134	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0001522 pseudouridine synthesis

GO:0042254 ribosome biogenesis

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001420.1	PF04410.9	Gar1	193	333	4.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.220
SRR1783600	control	1.192
SRR1783602	moderate drought stress	0.661
SRR1811619	moderate drought stress	0.653

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.461
DRR006520	Root Summer glycyrrhizin high producing strain	1.452
DRR006521	Root Winter glycyrrhizin high producing strain	1.749
DRR006522	Root Winter glycyrrhizin high producing strain	1.521
DRR006523	Root Summer glycyrrhizin low producing strain	2.788
DRR006524	Root Summer glycyrrhizin low producing strain	2.445
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.001
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.881

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.725
SRR2868004	Drought Stress (root)	1.413
SRR2967015	Control (root)	0.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.459
SRR9715740	Leaf	0.856
SRR9715741	Leaf	0.340
SRR9715739	Root	0.666
SRR9715742	Root	0.343
SRR9715743	Root	0.210

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.836
SRR8749028	MeJA induced 9h	9.449
SRR8749029	MeJA induced 9h	7.372
SRR8749030	Uninduced	1.337
SRR8749031	Uninduced	1.433
SRR8749032	Uninduced	0.918

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.427
SRR8400027	Control - Root	0.927