Gene detail

Gene detail information of Glyur000009s00001414

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20830.1	2.00E-81	transferases;folic acid binding
NR	XP_004487321.1	0	PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cicer arietinum]
COG	YP_001918954.1	1.00E-27	glutamate formiminotransferase [Natranaerobius thermophilus JW/NM-WN-LF]
trEMBL	tr\|V7C5W8\|V7C5W8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25539.1}

Sequence

Transcript Sequence

>Glyur000009s00001414.1
CTTCAGATTTCCACCGAATCAGGTTGCTGCAAGGTATATATATCAGAGAGCAGAAACAGGAGTGCATTGGAATCAATTGAAAGAGCTGCAAAGCTTTTCCCTTTGGCTCCCATAGTTAACAAGTTTGAAGATGTGGCCTACAATAGAGTTGGTTACACCCTTGTCTCTGAGTTGGCTCCACTCCCCTCTGCACCAGCAGAGCCACCTCACTTGACAAATGCTGTGTTGGCTATGGTGAAGGCTGCCTTTGACACTATTGACTTTGAGCTCCACAATGGAACTCATCCCAGGCTTGGGGTTGTGGACCACATTTGTTTCCATCCCCTGGTTGATGCTTCCTTGGATCAAGCAGCTAGGGCTGCTAGGTGTTTAGCCACTGACATGGGTTCTAGTCTTCAAGTTCCTACTTTCCTATACGGAGCAGCACATGAAGAGGGAAGGACACTNGATTCAATCAGAAGAACATTTGGTTATTTCAAGCCAAATTCTAGTGAAAACCAGTGGATTGGGGGGCTGAAATCANACTCTTTGCCACTGAATCCTGATGGTGGTCCATCTGAAATGACTCCAGCAAAGGGTGTTGTGGTCATTGGAGCAACCAATTGGGTTGNTAACTACAATGTCCCTCTACTATCTTCTGATATTAGTGCTGTTCGTAGAATNGCGAAACGGGTTAGTGGAAGAGGTGGTGGACTTGCTTCTGTGCAGGCCATGGCACTTACACACGGTGAAGGTGTCATTGAGGTGGCCTGTAATTTGTTGGATCCAAATAAGGTTGGTGGTGAACGAGTACAACAAGAAGTTGAGCGCCTTGCAAGGGAAGAAGGTATTCCTGTGAAAAGGGGATACTACACAGATTTTTCACAGGAAGAAATAGTTGAAAGTTACTTGAATCTGTTTGAAGAGAGAATTTGATGTGATGTCAAAGAACCCCATGTNATTCTCATGAGGGAAAATTACTTTCTCAAGCACTAGGAAGGTTTTTACCATATGGTGAACTTTTCATTCCAGTGCCAAATTGGCATTTATTTCCTTGAAAGGAAATAAATGGACTAATTTTTCATATAAAGCTTATCCTTCAATAGATCATTAAACCGACCTTAAAAGATTTCATTCTTGATTCTCACATGCCTCCCAGTTCTGCTTATGCTTCCAATGAACAATGTTCTATACATAGAACAATATAATGATGGGTGAACCAAACCTTATTGATGCATTTCAGTTACCTGGCAAGTTTAGTAGTAGACAGATTACTCATCATAATATTAGATTGGGAATTTACATAGGATATTACAGAATGAGAAACAAGGGCTTGAGTGTGGAGCAAAAGAAAACAGTAGACCACTCCATCTTGCTGTGCTGCAAATTCTTCGTCTCTGAAGGACGCAACATTGCTACTCTTGATGCAATCGAACGAGCTGCGAGGTTGAACCCAGAAAGTGTCATTGTGAACAAGTTTCATGATCGAGCCTACAACAGGGCAAGGTACACCATTGTGTCATATGTTTTGCATGACTGCACAGGAAATGCCATCTACAGCCCCTTGCAGCAAACTGTGGTGGCCATGGCTGAGGCTGCATTCAATTCCATCAACCTTGAAGTGCATGACGGGGCTCACCCCCGCTTAGGGGCGGTGGATGACATTGTTTTCCATCCACTTGCNCGTGGATCACTCGATGAGGCAGCGTGGCTGGCCAAAGCAGTGGCAACAGATATTGGCAACCAATTCAATGTGCCTGTATTTTTGTATGCTGCAGCACATCCAACTGGGAAGGAACTTGACACCATAAGGAGAGAGCTTGGATATTACCGGCCTAATTTCATGGGAAACCAATGGGCGGGATGGACTATGCCTGATATCCTGCCTCAGACGCCAGACAAAGGGCCTATTGTCGTTTCAAGAGCCAAAGGCATCTCAATGATCGGTGCACGCCCATGGGTCACCCTCTACAACATACCAATCTTGTCCACTGATGTATCAGCAGCAAGAAGGATTGCAAGGAAGGTTAGTGCTCGTGGTGGCGGGCTTCCTATGGTGCAAACACTTGGGCTTGTTCATGGTGAAGATTCAACTGAAATAGCTTGCATGCTTTTGGAGCCTAACCAGATTGGAGCTGACAGAGTGCAGAACCGGGTTGAGATGCTGGCAGCACAGGAAGGGTTGGATGTAGAAAAAGGATATTTCACTGACTTTTCTCCAGAAATGATAGTAGAAGAGTACATGAACCTAATCTCAGCTAACAGATCACGATCATAACTCATTACACTTGTTGATGAACAATCANAATCAAACTGTGAGATTTTAATTGGCCTTGCAATTCAGTAAATAAAAAAAGTTGTAATTGCCTGTTGGCTGGAAAAAAACTGTTGCTGTGTTGCTTCTAACTTTGAACCTGGAGTATCAACATATTGAAAACAAAATTCTGACCTTTTGCATCCTGAATGAATGATCACACTTATGTACACTTGACCTTATCCTACTTGTAGNTTATACCTTCATCACAAACACTGCTTGCGTTGAAAACCTTCAGACAACAAGGTCTGAAGCAGCTCACGCAGTCTCTCAGCACCAGGGCCTGGCCTAAACACAGTATCGTTGCCACGCAAAATACACGGGTCTGCCCCACCATCTGAGGAACCAACACACCATGCCCCAGGTGAAAATCTATGGGTGCGTCCTAGGAGTTCTTTGTCAATCTTGTCCAGGACAGGATCATCCTTTGCAAACTTTCGGGCAAAGGGAGCCTTGCTTTTAACCATTTTGTCAAAGTCCTTCATAGTTAGTGAGATGGGATGCTGTTTTGGGGGAGTGTCCCAAGCAATGTAATGAAGATCATGACTTATAACAGTATGGCGGAATTCCTCGGTATTACAAATGACAGTGTGAAAATAACCCTCTGGAGAGGAGATAAAATTTGTGTAATACATGAGGATGGTCCTTGGAAGGTTATTCCATCCCCATATACAGTACTCCACATAGGACCTGGTCAGCACAACCCAGGCGGAACCTGTTCATGGAATCATAAACTAAATATAAGGATCTACCATGCTGTTTACCCGAGGGAATAAATGTCAATCTGACTAGCTAACTAGATATTTAACAAACTTATGGTTTATGGTAGAGAGGAAGTGACAAATGTATATAGATAACAGGTATATGCTTACCGGTGAACAGCTTAAACGATGTAGGAAGTGTCCTTCGTTGTGTTGTCCATGCAATATCAGATTTCTTTGATAAGTAAAGGGCAGGATCAACAACAATCGGTCTTGCTCGATGGCTCCTGAGCACATAAGCAGTAAGATAAAGTAATGTCAATCAAATGCCAAGGAAAGGGGGGGTATATTACAGTATTTTCAGATTGTATCATAATTAACTTACAGTTTCCAACCAGCAATTCGTGTATGTTCAATGAAATTGAGATCCCTTGACAGATTAGAGAAAATATGAAGCAAATCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	237498	245734	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0005542 folic acid binding

GO:0016740 transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001414.1	PF07837.7	FTCD_N	56	249	1.10E-48
Glyur000009s00001414.2	PF07837.7	FTCD_N	56	249	1.10E-48
Glyur000009s00001414.3	PF07837.7	FTCD_N	9	200	3.90E-53
Glyur000009s00001414.4	PF07837.7	FTCD_N	6	199	2.20E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.829
SRR1783600	control	5.871
SRR1783602	moderate drought stress	6.709
SRR1811619	moderate drought stress	7.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.132
DRR006520	Root Summer glycyrrhizin high producing strain	8.424
DRR006521	Root Winter glycyrrhizin high producing strain	2.837
DRR006522	Root Winter glycyrrhizin high producing strain	2.486
DRR006523	Root Summer glycyrrhizin low producing strain	8.391
DRR006524	Root Summer glycyrrhizin low producing strain	7.131
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.823
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.595

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.134
SRR2868004	Drought Stress (root)	10.506
SRR2967015	Control (root)	10.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.004
SRR9715740	Leaf	16.487
SRR9715741	Leaf	20.496
SRR9715739	Root	2.215
SRR9715742	Root	3.679
SRR9715743	Root	3.659

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.666
SRR8749028	MeJA induced 9h	5.794
SRR8749029	MeJA induced 9h	3.287
SRR8749030	Uninduced	4.297
SRR8749031	Uninduced	4.160
SRR8749032	Uninduced	6.394

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.260
SRR8400027	Control - Root	4.352