Gene detail

Gene detail information of Glyur000009s00001412.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20810.1	0	galacturonosyltransferase 10
NR	XP_003593733.1	0	Glycosyl transferase protein A [Medicago truncatula]
COG	YP_007080337.1	3.00E-06	LPS:glycosyltransferase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9SKT6\|GAUTA_ARATH	0	Probable galacturonosyltransferase 10
trEMBL	tr\|G7IKA2\|G7IKA2_MEDTR	0	CAZy family GT8 glycosyltransferase {ECO:0000313\|EMBL:AES63984.1}

Sequence

Transcript Sequence

>Glyur000009s00001412.1
ATAAATCCCAACTGTATTCTTCCCTGTCTGTCACAGTAATCATCTCTCTCTCTCTCTTCTTTTCATTTGCTCATTGTTATTTATTATTATTGTAGTGATCACGAAGCTCTTCACCGGCGCATGCCCACCAAAGCAAAACCAAACATTTCTCCANAGTTGGAATCTTTTCAACCCCAAATATCCAAACCCAGAAACCCCAGTTGCTGCAGATCTCGGTAATACCTTGTGAAAGGAGGGCGCAATTGGGGTTTTTTATTTTTTTGAAGGAGTTTTTGAAACATGAGGCGAAGAGGGACTGATTTTCGAAGGCCAGTGAGGAGAAGGGTTCCAGATGCGCTGTGGTGGGCATTGTGCTGCGCAGTGGTTCTTCTATTTGTCTATATTCTTAGCAGAGGGAACCAGATTGAGTCTAGACCTGCTCTGTCCAAGAGAACTTACAAACATGATAGGATTATGGAAGGCCTTAATATTACTGAAGAGATGTTAAGTTCAAACTCTGTGACCAGACAACTAAATGATCAGATATCCCTAGCAAAAGCTTTTGTTGTAATTGCAAAAGAAAGTAACAATCTCCAATTTGCTTGGGAACTAAGTGCCCAGATCCGCAATTCACAGATTCTCCTCTCAAATNCCGCCACTAGGCGTGCTCCTTTAACAACCGGGGAATCAGAAAGTGCTATCCATGATATGGCATTATTGTTATACCAGGCCCAGCAGCTCCATTANGACAGTGCAACCATGATCATGAGATTCAAAGCAAAAATTCAATCTCTTGAAGAACAGATGAATTCTGTAAGTGAAAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAAAGCTTATACTGTCTTGGTGTCCGGTTGACCACAGAATGGTTCAAAAACCTTCATATGCAAAAGAAATTGAAGGACAAAAGGCAAGTGGAGATGAAGCTTAAGGATAACAAGCTTTACCACTTTTGTGTGTTCTCCGATAACATTGTTGCAACTTCGGTTGTGGTCAATTCCACTGCAATAAATTCTAAAAACCCCAATATGATTGTTTTTCACCTTGTCACTGATGAAATAAACTATCATGCGATGAAGGCATGGTTTTCCATGAATGATTTCCGTGGGGTGACCGTGGAAGTTCAGAAGTTTGAAGACTTCAGTTGGTTAAATGCTTCATATGTTCCTGTGCTCAAGCAACTTCAAGACTCAGAAATACAAAACTACTACTTTTCTGGCAACAGTGATGATAGCAGGACACCTATTAAGTTTCGCAACCCTAAATATCTATCCATGCTTAACCACCTGAGGTTCTACATCCCTGAAGTTTTTCCTGCANTGAAGAAGGTCGTGTTCCTGGACGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTTCCATTGATTTGAATGGGAATGTTAATGGAGCTGTTGAGACATGCATGGAGACATTTCACAGATACCATAAATACTTGAACTATTCTCATCCTCTTATACGAGCACATTTCGATCCGGATGCTTGCGGATGGGCCTTTGGGATGAATGTATTTGATTTGGTTGAATGGAGGAAAAAGAATGTAACTGGCATCTACCACTACTGGCAGGAAAAGAATGTNGACCGGACACTATGGAAACTCGGTACCTTGCCACCTGGACTGTTGACATTTTANGGATTAACCGAGCCCTTGGATCCGTCATGGCATGTACTGGGTTTTGGCTACACAAATGTTGATCCTCAGTTGATAGAGAGAGGGGCTGTACTGCACTTCAATGGGAACTCCAAACCATGGTTGAAGATTGGNATTGAAAAGTACAAGCCCCTATGGGAAAAATTTGTTGATTACTCTCATCCTTTATTGCAACAGTGCAACTTTCATTGATTTTGAATTGATATTGAATTGGAACTTCAAACCTTGGTGGAGGAAGATTTGGAATGTTCAGAAGTATTAGTCCCTATTGGTGGGTAGGGGAATACATCATTGACTATATTCCCATCCTCTATTGCAACAGTGAAACTTTTTATTGACTTGTGGAATTGGGAGGCTTGGTGAATGGTGATCCTTGCAAGGACAAGAGAATTGAATTGAGGTCGTAATTCTGTAGCCAGAAATGCTTGTACAATTTTAAANGGCCACAAGCATGTCTGGTGGCTTTAACTTTGGTGTATTCATTGATTCCGGATCTTCGGTTGTAGCATATAGATGTTCATTTGTCNAGTGTTATTAGACAATATCAGTTATAGTTTTTTCTGTGTTTTTATAGTCAAAGTTGAGATCAGCTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	228229	231782	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13648	GAUT	EC:2.4.1.43	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001412.1	PF01501.15	Glyco_transf_8	238	507	4.20E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.448
SRR1783600	control	12.204
SRR1783602	moderate drought stress	9.580
SRR1811619	moderate drought stress	9.782

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.378
DRR006520	Root Summer glycyrrhizin high producing strain	10.324
DRR006521	Root Winter glycyrrhizin high producing strain	13.322
DRR006522	Root Winter glycyrrhizin high producing strain	13.124
DRR006523	Root Summer glycyrrhizin low producing strain	8.518
DRR006524	Root Summer glycyrrhizin low producing strain	8.503
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.031
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.329

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.398
SRR2868004	Drought Stress (root)	15.920
SRR2967015	Control (root)	14.391

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.542
SRR9715740	Leaf	10.483
SRR9715741	Leaf	8.088
SRR9715739	Root	7.506
SRR9715742	Root	9.498
SRR9715743	Root	10.328

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.925
SRR8749028	MeJA induced 9h	11.507
SRR8749029	MeJA induced 9h	6.708
SRR8749030	Uninduced	6.080
SRR8749031	Uninduced	3.323
SRR8749032	Uninduced	3.556

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.540
SRR8400027	Control - Root	21.350