Gene detail

Gene detail information of Glyur000009s00001409

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11900.1	2.00E-57	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004487325.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g11900-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q5BIV3\|PPR35_ARATH	3.00E-67	Pentatricopeptide repeat-containing protein At1g11900
trEMBL	tr\|I1M3W6\|I1M3W6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G37680.1}

Sequence

Transcript Sequence

>Glyur000009s00001409.1
ATGATGTCTGGTGCTGCAATAGCAAGGTCTCTTTCTCGCTTTCACTTCAACCCCTGTTCTCCTCTTCTTTCAACAACCATATGTTTTCAGGCCTTTTCAACAGAGGCATCTTTTGACAAAGAGAGAGTAACGAGTGAAGTCTTGAAGGANTTTCTTGCCACTGTTGAAAATGCTCCAGCATCCAGTGTTCATGTATATTGTGCATATATTGATAAGACGTGCAAGGCTGGAAACCTTTCGGCNGCAAGCCAAATGCTACAAATTTTAAATGATAAGAACATTGTTGTTTCCCCTAATGTGTATAATCTCATATTAGTGGAAACAAGTCAAAAGAATGACATTGACCTTTCATGTCAAGTTTTCAAGAAATTACTACAGTCATGTAAATCCCCAAGTGCAACCTCGTGCATTAAGTTTGCCCANNCTTTCACAAAAGTAAGTGATTGTGCAGAGCTACTTAGATTTATTAAAGAAGTATCAGAGATAAGTGGTTTAAGTATGTCACCATTCATAAACAAGATCATTTTTGCCTTTGCCAAAAGTGGACAGAAGGATAAGGCCTTGGTGATATTTGATCATCTTAAAAGACACAACTATAGTGGTACTCTGGACCTGATCACATATAATATTGTTCTGGATATCTTGGGTCATACAGGCCGCNTGGATGAAATGNTTGNTGTGTTTGCATCCATGAAGGAAACTGGTTTTGTCCCAGATACTNTTTCTTACAACACACTGATAAATGGGTTGCGGAAGGCTGGAAGATCAGATATATGCTTTGCATATTTTAAGGAAATGAGTGAGAATGGAAATGAACCGGATNTGCTTACATATACTGCATTAATTGAGATTTTTGGCCGATCAGGAAATATTGAGGAATCACTGAAATGCTTCAGGGAGATGAAACTGAAGNGGATCCTTCCTTCAATACATATATACNNATCACTAATCCAGAATTTAAATAAAANAGGGAAGGTTGAGTTAGCAACAGAACTTTTAGAGGAGATGAATTCATCATCAACTTGTCTAGCTGGTCCAATGGATTTCAAGAAAAAAAGAAGGCAAAGAAACACTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	204862	206994	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001409.1	PF13812.1	PPR_3	172	198	0.011
Glyur000009s00001409.1	PF01535.15	PPR	206	236	0.0011
Glyur000009s00001409.1	PF13041.1	PPR_2	238	283	1.20E-11
Glyur000009s00001409.1	PF01535.15	PPR	312	338	0.022

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.851
SRR1783600	control	0.659
SRR1783602	moderate drought stress	1.463
SRR1811619	moderate drought stress	1.303

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.244
DRR006520	Root Summer glycyrrhizin high producing strain	4.138
DRR006521	Root Winter glycyrrhizin high producing strain	2.687
DRR006522	Root Winter glycyrrhizin high producing strain	2.208
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.863
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.474

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.727
SRR9715740	Leaf	5.444
SRR9715741	Leaf	5.141
SRR9715739	Root	0.571
SRR9715742	Root	2.167
SRR9715743	Root	0.903

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.074
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.131
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.765
SRR8400027	Control - Root	5.882