Gene detail information of Glyur000009s00001405 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10270.1 | 1.00E-19 | Wound-responsive family protein |
| NR | XP_007021244.1 | 4.69E-44 | 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao] |
| trEMBL | tr|F6HHI8|F6HHI8_VITVI | 1.00E-53 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB51684.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 173782 | 179496 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001405.1 | PF12609.3 | DUF3774 | 17 | 87 | 1.00E-21 |
| Glyur000009s00001405.1 | PF12609.3 | DUF3774 | 96 | 173 | 9.20E-28 |
| Glyur000009s00001405.1 | PF12609.3 | DUF3774 | 179 | 259 | 4.40E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.292 |
| SRR1783600 | control | 40.650 |
| SRR1783602 | moderate drought stress | 19.407 |
| SRR1811619 | moderate drought stress | 18.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.901 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 398.110 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 389.364 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.477 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.045 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.776 |
| SRR2868004 | Drought Stress (root) | 13.028 |
| SRR2967015 | Control (root) | 13.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.519 |
| SRR9715740 | Leaf | 32.922 |
| SRR9715741 | Leaf | 35.974 |
| SRR9715739 | Root | 31.822 |
| SRR9715742 | Root | 26.177 |
| SRR9715743 | Root | 26.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 118.442 |
| SRR8749028 | MeJA induced 9h | 142.261 |
| SRR8749029 | MeJA induced 9h | 146.829 |
| SRR8749030 | Uninduced | 26.608 |
| SRR8749031 | Uninduced | 49.013 |
| SRR8749032 | Uninduced | 96.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 63.287 |
| SRR8400027 | Control - Root | 109.397 |