Gene detail

Gene detail information of Glyur000009s00001401

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20890.1	5.00E-107	photosystem II reaction center PSB29 protein
NR	XP_003540338.1	1.11E-180	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Glycine max]
Swissprot	tr\|Q7XAB8\|THF1_SOLTU	4.00E-148	Protein THYLAKOID FORMATION1, chloroplastic (Precursor)
trEMBL	tr\|I1LUC3\|I1LUC3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G32680.1}

Sequence

Transcript Sequence

>Glyur000009s00001401.1
CGCTCTTACCTGACTCTGTGATTCCGCATCCGACTTCACAGTGTGGATAAGCTTTTCTGTTTCCAACACAAACGTTTGAAAGCAGTGCGTGCGAGTCTCCTCTGAATTTTGTCCTCCTATGAAGGACACTTTCCGAATCTGATTGCCTCTACTTTCTCTCTCGCGTGTTGCATAACTTACTTTGTATTTCTTCCATTTCCATTCATGGCGGCTCTTACTTCTTTGTCATTCTCAGCAGTGAATCGATGCTTAGAAAGAAAAGTGACACTGCCCTCCACTCGTTTCGTTGAGGTCTTTGGAATTAGGACCCATTTCTCGTACCATCATTGTGTTGGTGTTCGAGCTGCCAATTCTGCATCTAAAATGGTCATTCAATGCATGTCTTCTTCCACAGATCTTCCCACTGTTGCTGAGACAAAGATGAATTTCCTTAAGGCTTATAAGCGACCAATCCCTAGTATCTACAACACTGTGCTGCAGGATCTCATTGTTCAGCAACATTTGATGAGATACAAGGCATCATACCGTTATGACCCTGTGTTTGCTCTCGGTTTTGTCACTGTATATGATAAACTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCCNTCTTCAAAGCATATATTAAGGCATTGAATGAAGATCCAGAAGAATACAGAATAGATGCACAGAAGTTGGAAGAGTGGGCCAGGGCTCAAAACCCAACTTCCCTGGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAAGGGAAGTTAAAGGATATTGCAGCAAGAGCAGGAAGAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTCTTTCGTCTTCTTGAGTTGGCAAATGCAATGGAACCAACAATTTTAGAAAAGCTTTGTGTGGCTTTGAACATCGACAAAAGAAGTGTTGATCGAGACTTGGATGTGTATCGCAATCTGCTTTCCAAGTTGGTTCAAGCAAAAGAGCTGCTAAAGGAATATATTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCCGAACCCCAGAAGGCCAATGAGACCATTACAAAATGTCTGGGACAACAATTGTCTAGCGTTTAGCTATGGTCTTCTGAAACAATCTCCTAGTGAAGACTTCTTATCCTTGACATGCCTTTTCTTGGTCCTATGAGTTGGATAAGCAGAGAATCAGCTTGGTTTAGCATATTGCACTTGGTGTAAATTGCAATCTTCTGTTATGGTTATCCACCTAAACCACAATTAATTCACCCATCCAACACGATTGCATGTATTATTATTTTTTTCCTCGCAGTCACAAATGTATTCCATAGTTCTCACACGCAAGCCTGAAGACATTATTTCTGNCTAGTTTTCTTCTTCTATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	163335	166833	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0010207 photosystem II assembly

GO:0015979 photosynthesis

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001401.1	PF11264.3	ThylakoidFormat	67	273	3.10E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.500
SRR1783600	control	31.721
SRR1783602	moderate drought stress	28.009
SRR1811619	moderate drought stress	27.605

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.176
DRR006520	Root Summer glycyrrhizin high producing strain	18.888
DRR006521	Root Winter glycyrrhizin high producing strain	37.137
DRR006522	Root Winter glycyrrhizin high producing strain	36.984
DRR006523	Root Summer glycyrrhizin low producing strain	14.558
DRR006524	Root Summer glycyrrhizin low producing strain	15.602
DRR006525	Leaf Summer glycyrrhizin high producing strain	195.898
DRR006526	Leaf Summer glycyrrhizin high producing strain	195.868

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.141
SRR2868004	Drought Stress (root)	25.356
SRR2967015	Control (root)	26.803

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	165.327
SRR9715740	Leaf	270.537
SRR9715741	Leaf	154.313
SRR9715739	Root	19.244
SRR9715742	Root	17.851
SRR9715743	Root	15.109

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.934
SRR8749028	MeJA induced 9h	49.430
SRR8749029	MeJA induced 9h	32.133
SRR8749030	Uninduced	18.434
SRR8749031	Uninduced	11.464
SRR8749032	Uninduced	11.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.989
SRR8400027	Control - Root	37.622