Gene detail information of Glyur000009s00001400 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20890.1 | 7.00E-108 | photosystem II reaction center PSB29 protein |
| NR | KHN36599.1 | 7.99E-13 | hypothetical protein glysoja_001330 [Glycine soja] |
| Swissprot | tr|Q7XAB8|THF1_SOLTU | 2.00E-147 | Protein THYLAKOID FORMATION1, chloroplastic (Precursor) |
| trEMBL | tr|K7LW04|K7LW04_SOYBN | 4.00E-09 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G32685.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 156476 | 161960 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001400.2 | PF11264.3 | ThylakoidFormat | 68 | 274 | 8.50E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.917 |
| SRR1783600 | control | 1.075 |
| SRR1783602 | moderate drought stress | 1.547 |
| SRR1811619 | moderate drought stress | 1.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.273 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.839 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.049 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.222 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.695 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 114.275 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 111.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.734 |
| SRR2868004 | Drought Stress (root) | 7.232 |
| SRR2967015 | Control (root) | 6.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 82.612 |
| SRR9715740 | Leaf | 138.467 |
| SRR9715741 | Leaf | 96.826 |
| SRR9715739 | Root | 1.278 |
| SRR9715742 | Root | 0.934 |
| SRR9715743 | Root | 1.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.919 |
| SRR8749028 | MeJA induced 9h | 1.148 |
| SRR8749029 | MeJA induced 9h | 1.054 |
| SRR8749030 | Uninduced | 0.463 |
| SRR8749031 | Uninduced | 0.163 |
| SRR8749032 | Uninduced | 0.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.519 |
| SRR8400027 | Control - Root | 4.394 |