Gene detail

Gene detail information of Glyur000009s00001392

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G05120.1	7.00E-58	Major facilitator superfamily protein
NR	AFK42107.1	2.00E-104	unknown [Lotus japonicus]
Swissprot	tr\|Q9M0Y3\|ENT3_ARATH	7.00E-84	Equilibrative nucleotide transporter 3
trEMBL	tr\|I3SPB5\|I3SPB5_LOTJA	7.00E-105	Uncharacterized protein {ECO:0000313\|EMBL:AFK42107.1}

Sequence

Transcript Sequence

>Glyur000009s00001392.1
CTTCTGGCCTTTCTTCTTTCTCTCTTCCTCTCATCGCGCGCGTCTGGGGTTAAATAATTAACGTGCGGGAATCTCTCTCTATTAATAGAAAATTTGATTGAAAAGAAGCATCCACAGCGGCCATGGTCAACACTACTGAGCTTCCAACACGTCTTGAGGGAAAATATGCTGCAATAGCGGTCTGCTGGCTTCTTGGCAATGGATGTCTTTTCTCATGGAACAGCATGCTAACAATAGAAGATTACTACATTTACTTGTTTCCGGATTACCACCCCTCCAGGGTGCTTACTCTTGTATACCAGCCATTTGCAGTTGGAACACTTGCTATACTGTCTTATAATGAGGCAAAACTCAATACCAGAATACGGAACCTGTTTGGATATACTCTGTTTTTCATAACCACTTTGTTGGTGTTAATTTTGAATTTACCAACTAAAGGAGGACTTGGAACTTTCATTGGTATATGTGCAATTAGTGGTGCTTTCGGAGTTGCAGATGCCCATGTTCAAGGTGGAATGGTGGGAGACCTGTCTTTCATGCGACCAGAATTCATTCAGGGCGAGGATTTTGTTAAAGAACAAGAGAGGAAAGGAAACAAGCAATTGTTATTGGAAAACATTGATTATGCACTTGATATGTTCCTAATATATNCGCTAACACTATCTATATTCCCCGGATTCCTATCAGAAGATACTGGAGCACATAGTTTAGGATCTTGGTATGCTCTCGTTTTGATTGCAATGTACAATGTGGGGGATCTGATTGGAAGATGCATCCCACTGTTGAAATTCATGAAGCTGGAGTCCCGAAAGTTGATCACAGTAATAATTCTATGTCGTTTCTTACTTGTTCCTGCATTTTATTTCACTGCAAAGTATGGTGACCAGGGGTGGATGATAGTGTTGACATCCTTCTTGGGGCTATCCAATGGTTACCTCACTGTCTGTGTTCTGACTTCTGCACCAAAAGGTTATAAGGGTCCAGAACAAAATGCCTTGGGAAACCTGCTGGTGTTGTTTCTTCTTGGAGGTATTTTTGCAGGGGTGACACTAGATTGGTTGTGGTTAATAGGTAAAGGTTGGTGAGATCTCAATCATGCCAGAGTAAAGGAATGGTTGTGAGGCATTCCTTGTAAAAGAAAATGAAAAGTGTTTATAGTTTATAGCGTGTTCTTATGCTAATTTTAAAAAATAAATTGGTTAATTTCGGTGATTCCTTCTTTGTAATCTAACATTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	100992	105131	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005337 nucleoside transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001392.1	PF01733.13	Nucleoside_tran	163	314	1.00E-19
Glyur000009s00001392.2	PF01733.13	Nucleoside_tran	163	314	1.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.211
SRR1783600	control	1.147
SRR1783602	moderate drought stress	0.702
SRR1811619	moderate drought stress	0.742

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.405
DRR006520	Root Summer glycyrrhizin high producing strain	0.594
DRR006521	Root Winter glycyrrhizin high producing strain	12.862
DRR006522	Root Winter glycyrrhizin high producing strain	13.762
DRR006523	Root Summer glycyrrhizin low producing strain	0.073
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.584
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.692

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.003
SRR2868004	Drought Stress (root)	28.636
SRR2967015	Control (root)	36.203

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.525
SRR9715740	Leaf	11.104
SRR9715741	Leaf	16.089
SRR9715739	Root	0.514
SRR9715742	Root	3.777
SRR9715743	Root	3.345

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.313
SRR8749028	MeJA induced 9h	17.772
SRR8749029	MeJA induced 9h	8.374
SRR8749030	Uninduced	34.595
SRR8749031	Uninduced	18.240
SRR8749032	Uninduced	15.636

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.165
SRR8400027	Control - Root	12.458