Gene detail

Gene detail information of Glyur000009s00001383.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19130.1	0	S-locus lectin protein kinase family protein
NR	XP_004487351.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Cicer arietinum]
COG	YP_001958461.1	1.00E-26	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|O64477\|Y2913_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (Precursor)
trEMBL	tr\|G7IRL5\|G7IRL5_MEDTR	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000009s00001383.1
ATGTGCTGCAACAATACGAGGAAGCCATGGTTCTGTCTTCCTCTTCTCACCCTCTTCTTCTTCATCTTCTCTTTACACCCTTATCCTTCCCTTGCAGCTCTAACCACCATCTCATCAAACCAATCTCTCTCCGGCGATCAAACTCTCGTTTCTGAAGGTGGGATCTTTGAACTGGGTTTCTTCAAGCCAGGTAACTCCTCAAACTACTACATAGGCATATGGTACAAAAAGATCACTCGACAAACAATTGTCTGGGTAGCCAACAGAGACCGCCCAGTCTCTGATAAGAACAGAGCCACGTTGAAAATATCAGGTGGGAATTTAGTTCTATTAAATGAGTCTTCAGTTCAAGTTTGGTCAACAAACATGAGTTCAGGTTCTTCTGTCGTAGTAGCTGTACTTTTAGACACTGGCAATCTCGTTTTAAGAGATAGGCCTAATGATAATACATCAAAACCTCTCTGGCAGAGTTTTGACCACCCATCAGATACATGGCTTCCAGGTGGTAAAATTAAGCTAGACAATAAAACAAAACAACCCCAGTATCTAACTTCGTGGAAAAATAAGGAAGACCCTGCAACGGGTCTCTTCTCTTTGGAGTTAGACCCCAAAGGAACAAACTCATATCTCATTCTTTGGAACAAGTCTGAACAGTATTGGACCAGTGGCTCTTGGAATGGACATATTTTCAGCCTGGTTCCTGAGATGAGAGCGAATTATATATACAATTTCTCGTTTGTGTCGAATGAGAACGAGAGCTATTTCACCTATTCCTTGTATAACCCTTCCATTATATCTCGGTTTGTGATGGATGTCTCGGGTCAGATTAAGCAGTTGTCGTGGTTGGAAAACATCAAAGAATGGAACTTGTTTTGGTCACAGCCAAGGAGGCAGTGTGAGGTTTATGCTTTCTGTGGTGCGTTTGGGAGTTGCACTGAGAACTCAATGCCGTATTGTAACTGTTTGAGTGGTTTTGAGCCAGAGTCACAGTCCGATTGGGATCTTGAGGATCATTCACGTGGGTGTAAGAGGAGAACAAGGTTGCAATGCGAGAGTGAGGGTTCAAATCAATCTAAAGGGACTACGGTTAAGGACAGGTTTCGTGCAATCCCAAACATGGCATTACCTAAACATGCACAATCTGTTGGATCAGGGAATGCAGGGGAATGTGAATCAACATGCTTGAATAACTGTTCCTGCACGGCTTATGCATATGACAGTAATGGGTGTTCGATTTGGATTGGAGACCTTTTGAATCTGCAGCAATTGTCTCTAGATGATAGTAGTGGAGAAACTCTGTATCTCAAACTTGCGGCTTCAGAGTTTCATGATGCTAAGAATAACAGTGGGGTGATTATTGGTGTTGTTGTGGGAGCTGTTGTTGGCATTGGGGTTCTCTTGGCGCTTGTTGTGTTTTTCATGATTAGAAGAAGAAAGAGAATGGTTGGAACTGGAAAGCCTGTGGAGGGTTCGTTGGTGGCATTTGGGTATAGGGATTTGCAAAACGCGACTAAGAATTTCTCTGAGAAATTGGGAGGAGGTGGATTTGGTTCTGTTTTCAAAGGAACATTGGGTGATTCCAGTGTGGTGGCAGTGAAGAAGCTGGAGAGTATTAGCCAAGGAGAGAAGCAGTTCCGAACAGAAGTGAGCACAATAGGGACAGTGCAACATGTTAACCTTGTTCGCCTCCGCGGATTCTGCTCAGAAGGTACAAAAAGGTTGCTGGTTTATGATTACATGCCAAATGGTTCCCTGGATTTTTATCTGTTCCAGAACAAGAATTCTAAGTCGTTGGATTGGAAAATGAGGTACCAATTTGCTGTTGGAACTGCAAGGGGGTTAACTTACCTCCATGAGAAGTGTAGAGACTGTATCATACACTGTGATATAAAGCCGGAAAACATCCTCCTAGATGCTGAGTTTGTTCCAAAAGTTGCGGACTTTGGACTTGCAAAGCTAGTTGGAAGGGATTTCAGCAGGGTCCTAACAACAATGAGAGGAACAAGGGGTTATCTTGCACCTGAGTGGATTTCTGGGGTGGCTATCACAGCAAAAGCCGATGTTTATAGTTACGGAATGATGCTTTTTGAGTTGGTATCTGGTAGGAGGAACTCTGAGACATCTGAAGATGGACATGTTACTTTCTTTCCTACTTTGGCTGCAAATGTTGTTGTCCAAGGTGGAAGTGTCATTGACCTTTTGGACCCTAGGTTGGAGGGAAATGCTGACATTGAGGAGGTTACTAGAATAATAAAAGTTGCTTCTTGGTGTGTTCAGGACAATGAATCTCAGCGGCCAACCATGGGTCAGGTGGTTCAACTTCTTGAGGGGATATTGGAACTGAATTTGCCTCCGGTTCCAAGATCTCTTCAAGTGTTTGTTGAGAACCAAGNGAGCGTGGTTTTCTACACTGACTCTAGCTCCACACAAAGCTCACAGGTAAAGAGCAATGTATCACTAAGCTCTCAGGCCAAAAGCAACATCTCATCAGCTAGCTCCAAGTCCTTGGAAGAAAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00009	55070	57589	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000009s00001383.1	PF01453.19	B_lectin	81	192	2.20E-35
Glyur000009s00001383.1	PF00954.15	S_locus_glycop	220	328	3.10E-37
Glyur000009s00001383.1	PF08276.6	PAN_2	364	420	2.10E-16
Glyur000009s00001383.1	PF00069.20	Pkinase	508	773	1.20E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.930
SRR1783600	control	7.075
SRR1783602	moderate drought stress	18.243
SRR1811619	moderate drought stress	17.965

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.737
DRR006520	Root Summer glycyrrhizin high producing strain	7.503
DRR006521	Root Winter glycyrrhizin high producing strain	13.008
DRR006522	Root Winter glycyrrhizin high producing strain	12.818
DRR006523	Root Summer glycyrrhizin low producing strain	7.755
DRR006524	Root Summer glycyrrhizin low producing strain	7.673
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.279
DRR006526	Leaf Summer glycyrrhizin high producing strain	35.403

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.567
SRR2868004	Drought Stress (root)	22.127
SRR2967015	Control (root)	23.208

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	37.150
SRR9715740	Leaf	62.095
SRR9715741	Leaf	64.410
SRR9715739	Root	9.548
SRR9715742	Root	23.692
SRR9715743	Root	21.493

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.481
SRR8749028	MeJA induced 9h	11.483
SRR8749029	MeJA induced 9h	4.537
SRR8749030	Uninduced	19.569
SRR8749031	Uninduced	9.010
SRR8749032	Uninduced	5.533

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.490
SRR8400027	Control - Root	9.731