Gene detail information of Glyur000009s00001379 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54490.1 | 2.00E-33 | pinoid-binding protein 1 |
| NR | AES67313.2 | 1.64E-64 | calcium-binding EF-hand protein [Medicago truncatula] |
| Swissprot | tr|Q9LSQ6|PBP1_ARATH | 1.00E-41 | Calcium-binding protein PBP1 |
| trEMBL | tr|G7IRK4|G7IRK4_MEDTR | 6.00E-65 | Calcium-binding EF-hand protein {ECO:0000313|EMBL:AES67313.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 29818 | 30195 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001379.1 | PF13833.1 | EF-hand_8 | 42 | 95 | 2.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.646 |
| SRR1783600 | control | 0.721 |
| SRR1783602 | moderate drought stress | 0.101 |
| SRR1811619 | moderate drought stress | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.580 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.046 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.956 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.141 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.637 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.458 |
| SRR2868004 | Drought Stress (root) | 43.438 |
| SRR2967015 | Control (root) | 28.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.508 |
| SRR9715740 | Leaf | 65.745 |
| SRR9715741 | Leaf | 65.721 |
| SRR9715739 | Root | 156.073 |
| SRR9715742 | Root | 188.493 |
| SRR9715743 | Root | 177.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 328.200 |
| SRR8749028 | MeJA induced 9h | 265.072 |
| SRR8749029 | MeJA induced 9h | 556.711 |
| SRR8749030 | Uninduced | 961.309 |
| SRR8749031 | Uninduced | 540.029 |
| SRR8749032 | Uninduced | 530.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.229 |
| SRR8400027 | Control - Root | 35.747 |