Gene detail information of Glyur000009s00001371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16730.1 | 4.00E-99 | terpene synthase 02 |
| NR | XP_003597053.1 | 0 | Myrcene synthase [Medicago truncatula] |
| Swissprot | tr|B9RHP7|TPS11_RICCO | 0 | Probable terpene synthase 11 |
| trEMBL | tr|A0RZI3|A0RZI3_MEDTR | 0 | Terpene synthase {ECO:0000313|EMBL:ABB01626.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00009 | 3742 | 7513 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20979 | GES | EC:3.1.7.11 | Monoterpenoid biosynthesis | map00902 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000009s00001371.1 | PF01397.16 | Terpene_synth | 69 | 225 | 4.80E-38 |
| Glyur000009s00001371.1 | PF03936.11 | Terpene_synth_C | 256 | 526 | 4.60E-85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.389 |
| SRR1783600 | control | 1.439 |
| SRR1783602 | moderate drought stress | 0.889 |
| SRR1811619 | moderate drought stress | 0.878 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.115 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.051 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.031 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.348 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.603 |
| SRR2868004 | Drought Stress (root) | 52.542 |
| SRR2967015 | Control (root) | 19.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.532 |
| SRR9715740 | Leaf | 2.100 |
| SRR9715741 | Leaf | 4.527 |
| SRR9715739 | Root | 0.088 |
| SRR9715742 | Root | 0.936 |
| SRR9715743 | Root | 0.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.726 |
| SRR8749028 | MeJA induced 9h | 0.918 |
| SRR8749029 | MeJA induced 9h | 0.714 |
| SRR8749030 | Uninduced | 14.201 |
| SRR8749031 | Uninduced | 126.517 |
| SRR8749032 | Uninduced | 21.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.977 |
| SRR8400027 | Control - Root | 9.279 |