Gene detail

Gene detail information of Glyur000008s00001368.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19330.1	0	ARM repeat protein interacting with ABF2
NR	XP_004496757.1	0	PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like isoform X1 [Cicer arietinum]
COG	YP_006545503.1	1.00E-05	heat repeat-containing PBS lyase [Methanoculleus bourgensis MS2]
Swissprot	tr\|B9DHT4\|ARIA_ARATH	0	ARM REPEAT PROTEIN INTERACTING WITH ABF2
trEMBL	tr\|V7BE87\|V7BE87_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15218.1}

Sequence

Transcript Sequence

>Glyur000008s00001368.1
TGCGTGCAATTCCAGAAATACCGCTCCCATCCGTCCTCTGTTCAAATCTAAAAAATTCCATTTCTCGCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGTTAACCAGAGCGAGCGCAAACACACTGCGAAGAACCTTCCTCTTCTTCTCTCGTTGTTCCTCTCGTTCATGGAGTTTCAGAGGCGCCAAGACCATAGCCTCTCCGAGAGAAAGGGCCAGAAGCGGAAGCTAGAGGAGGAATTACACGAAGAGCGACAGATCTCGGCGGCGCCGCCCACCGCCGACGAACGGGCGGCACTTCTCGCCGAAGTCGCCGACCAGGTGAGCGTACTCGANTCGACTTTCACGTGGAACGAAGCCGATCGAGCAGCGGCCAAGCGCGCCACTCATGCGCTCTCCGATCTCGCGAAGAATGCACGTGCTTGTATGAATCGAATGGTGGTTGTGTTTGCAGAGGAAGTAGTGAACGTGATTGTTGAAGGAGGTGCGATTCCTGCTCTGGTTAAGCATCTTCAGGCGCCGCCTCTGAGTGATTGTGTNCAGAAGCCATTGCCGTTTGAGCACGAGGTCGAGAAAGGGAGCGCTTTCGCGCTAGGACTTCTTGCCGTCAAGCCAGAGCATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTTTTAAAGAGGCAAAAAAATGGTTTAACTTCTCGTGCCATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATTACTAATCTTGCTCATGAGAATAGTAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTAGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCTACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTCCACTCTTCTCCAAACATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGACAGTTTGCAGCAACTGATTCTGATTGCAAGGTTCACATTGTACAAAGAGGTGCTGTCCGACCTTTGATTGAGATGCTTCAGTCTCCTGATGTACAACTTAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCCCAGGACACACACAACCAAGCTGGTATTGCACACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTTATTCGGGTAGGTGGAGTTCAGAGACTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCGCTGCCATGTGCTGAAGCATTTGTTATATCTCATGCGAGTTTCGGAAAAGGGTTTTCAAAGACGAATTGCTTTGGCTCTTGCACATCTTTGTTCTGCAGATGATCAAAGAAGAATTTTTATTGATCACCATGGTCTTGAGTTGCTTATTGGGCTTCTTGGTTCATCTAGCTCTAAGCAGCAACTTGACGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCGACTCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGNGAGCAGTATGTAAACAATGCTACATTGTCCGATGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGACGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATTCCAAATATTAGATGGGAAGTCTTTGAGTTGATGATGAGATTTATATATACTGGATCAGTTGATGTCACTCTGGATATTGCCCAAGATCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTCAAGAGACTATGTGANTACACGATTGCACAGGATATATCACTAGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCNATATCATTGAGGCATGCATGCATCCTTTTTATCTTGGAGCACTTTGATAAGTTGAGCGCAAGGCCAGGGCACGCTCTTCTGATTCAGCGTATAATACCAGAGATCCGTAATTACTTTGTTAAAGCTCTTACAAAGGCCAGCTCCCATAACAACCGACTGTAGTGTGCGGCCATTCTATTCTTGACCTCTAACCAATTGTATGTACAGAATGTAGTAGATGTTACTCCTTGTGTTGAANCAGGAAGGGGTCTCCTGTTTGGTATACAGCTTGGCTAAAAGCAATATCTGACACCAGAGTAATGCATGTTCTTTCTTTTTTTCCTTTCTTTTAATGCAGTGTAAGCCCCTTTCTGTCTGTAACGTCATTATCATAGATATAGCAAATATAGCCTTCACGAACATTGTTTTTTCTTATGCAATATTGTGATGGTTCTCTTATTAGATGATTTTCACATTCAGGGAATTGCGATTGTTGAGTTTATGATCATATATGTAAATATTGTTTCCCCAATTACATATGACGATCAGAGAGTTGTCTGCAAAAAAAATTGTGCTGCTGGGTAATTTATGCCAGGCCATTAAATCCTGTCATCTGACATGGAAATGTTGTAAATTACAGTAGCAAATACTTGTGATTTAAATATACTCGTGGGAGTTATGACCGAAGGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	727474	734965	+

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001368.1	PF00514.18	Arm	204	237	3.20E-07
Glyur000008s00001368.1	PF00514.18	Arm	240	279	1.80E-07
Glyur000008s00001368.1	PF00514.18	Arm	324	363	0.00013
Glyur000008s00001368.1	PF00651.26	BTB	545	647	1.10E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.513
SRR1783600	control	15.519
SRR1783602	moderate drought stress	26.961
SRR1811619	moderate drought stress	26.818

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.351
DRR006520	Root Summer glycyrrhizin high producing strain	19.091
DRR006521	Root Winter glycyrrhizin high producing strain	42.512
DRR006522	Root Winter glycyrrhizin high producing strain	41.356
DRR006523	Root Summer glycyrrhizin low producing strain	22.761
DRR006524	Root Summer glycyrrhizin low producing strain	22.902
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.139
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.241
SRR2868004	Drought Stress (root)	31.309
SRR2967015	Control (root)	30.317

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.985
SRR9715740	Leaf	21.499
SRR9715741	Leaf	26.127
SRR9715739	Root	23.854
SRR9715742	Root	32.517
SRR9715743	Root	30.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.567
SRR8749028	MeJA induced 9h	30.255
SRR8749029	MeJA induced 9h	22.803
SRR8749030	Uninduced	27.339
SRR8749031	Uninduced	29.335
SRR8749032	Uninduced	31.913

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	47.025
SRR8400027	Control - Root	43.902