Gene detail

Gene detail information of Glyur000008s00001366

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05990.1	4.00E-172	Leucine-rich repeat (LRR) family protein
NR	XP_004496756.1	0	PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Cicer arietinum]
COG	YP_004775215.1	4.00E-13	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9ZQR3\|Y2451_ARATH	1.00E-52	Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 (Precursor)
trEMBL	tr\|G7IE12\|G7IE12_MEDTR	0	Serine/Threonine kinase, plant-type protein, putative {ECO:0000313\|EMBL:AES62682.1}

Sequence

Transcript Sequence

>Glyur000008s00001366.1
GTGAAGGAGTCTACGCCCGTCCCACCAATGCCGTCCNTCCAATATCCATCATAACGGTAACAAAACCAAACAGAACAAATAAAAGCAAAGAATGAAATACATGCGAGTGATGTGGTGCGGTGCGGTGCCGTCTCGGAAGCGAGAGTCTGACCAGTAAACACAGTTTCCCGCGTCACCCATTCCATTAATTTTTCTTCCCCCACCCAACTATATTCTTTTCTTTGTGCCTTCCTCCATATTCTTCCATTCACGTTTTCTTCCCTCCCACTCCTTCTGCGCTTTCTCTTTCCCGAATCATTCATCACTCACCACCAAGANCCCTTCAACCCCAACAGTCACAATTCTTAAAAAGTCTCTACTAATTCTTAACCACCTTCACTTACTCTTATTTCCCCAACCACCACCATGCCCCTCCTCTTCCTCCTCCTCTTCTTCTCCCCTCTTTTCCTCACCCTTTCCCTCTCTCAAACAACACAACCCCCCAAAGGCTACCTCATTGACTGTGGAGCCCTCTCAGAGACCCAAATCGAGGGTCGTGAATGGCTTCCCGATTCGGGCTTCGTCTCCACGGGCACACCCAAAAACATCACCACCCCTGTTCTGCTTCCAACTCTGAAAACCCTTCGCTCCTTCCCTCTCCNCGTCAAGAAGCACTGCTACAATGTTCCCGTGTATCGCGGTGCAAAGTACTTGGTGCGGACCACCTATTTCTACGGAGGGGTCAACGGCCCTGACCGCCCTTCGCCGCCGGTGTTTGACCAGATCGTTGACGGGACCCTGTGGAGCGTGGTTAACACCACGCGGGATTATGTTAACGGGAACTCCACGTTTTACGAAGGGGTTTTCTTAGCTCAGGGGAAGTTCATGAGCTTCTGTATCGGGTCGAATACTTACACGGATTCTGACCCGTTTATATCTGCTTTGGAGTTTTTGATTCTCGGGGGTTCCCCCTACAACACCACGGATTTCACCAACTATGGCCTTAGCTTGGTTGCAAGGCACAGTTTTGGATACTCCGGTCAACCCATTCGATATCCTGATGATCAGTTTGACCGTATCTGGGAGCCTTTTGGGCAGAGTAATTCTACCAAAGCAAACACTGATAATGTTTCTGTTTCTGGTTTTTGGAACCTGCCACCTTCAAAGATATTTGAGACTCATATAGGATCTGATCAATTGGAATCCTTGGAACTGAGATGGCCCACAGCATCACTTCCAAGCTCCAAATACTACATCNCCCTATACTTTGCTGACAACACTGGTGGATCAAGAATTTTTAACATAAGTGTGAATGGTATACACTATTACCGCAATTTGAATGCTATCCCATCGGGTGTTGTTGTCTTTGCCAACCAGTGGCCTCTTTCNGGTCCTACAACAATAACTTTTACCCCTGCTGCTACTTCATCCTTGGGCCCCTTGATCAATGCTGGTGAAGTTTTTGATGTGCTGTCACTTGGAGGAAGAACTTTGACTCGAGATGTTATTGCTTTGGAAAGTGTAAGAGATAGCCTCCGAAATCCTCCACTTGATTGGAGTGGTGATCCTTGTGTGCCTCGGCAATACTCATGGACTGGCATCACATGCTCTGAAGGACCTCGNATCCGTGTAGTGACTTTAAATTTGACAAGTATGGATCTTTCAGGGTCTTTATCACCATTTGTTGCCAATATGACAGCTCTGACTAACATCTGGCTTGGGAATAACAGTTTATCAGGACAGATTCCTAACCTCAGTTCACTAACAATGTTGGAGACACTGCACTTGGAAGACAATCAATTCAGTGGAGAGATTCCCTCATCCCTAGGGAACATCAGCAGCTTAAAAGAAGTATTTTTACAAAACAACAATTTGACTGGTCAAATTCCAGCAAATCTTAGTGGAAAACAAGGACTGGAGCTCAGAACTTCCGGAAATAATTTCACATCACCACNAGCACCTTGAGTGATTTGCTTGGTGCCTTCCATGGTAGAGATGAAGATTGTCCTTTTGTCAAGAAAATTTTATTATTTTTGTGCTTAGATTATTCTGATTTTGGTGGAGATTCTTCATTGTCAACTCATCAACTGAAGATCAATTCAAACTTCTCTTGGCATACGGGTTTCTTGTTTTAACTTANGAGTGTACTTTCAGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	718083	722555	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001366.1	PF12819.2	Malectin_like	31	348	1.20E-69
Glyur000008s00001366.1	PF00560.28	LRR_1	449	469	0.57
Glyur000008s00001366.1	PF00560.28	LRR_1	472	492	1.1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.840
SRR1783600	control	9.952
SRR1783602	moderate drought stress	6.073
SRR1811619	moderate drought stress	5.853

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.295
DRR006520	Root Summer glycyrrhizin high producing strain	6.156
DRR006521	Root Winter glycyrrhizin high producing strain	1.874
DRR006522	Root Winter glycyrrhizin high producing strain	1.793
DRR006523	Root Summer glycyrrhizin low producing strain	12.260
DRR006524	Root Summer glycyrrhizin low producing strain	12.464
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.384
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.604

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.627
SRR2868004	Drought Stress (root)	29.917
SRR2967015	Control (root)	25.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.973
SRR9715740	Leaf	14.348
SRR9715741	Leaf	28.636
SRR9715739	Root	9.451
SRR9715742	Root	26.038
SRR9715743	Root	21.876

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.966
SRR8749028	MeJA induced 9h	62.838
SRR8749029	MeJA induced 9h	36.971
SRR8749030	Uninduced	43.219
SRR8749031	Uninduced	27.952
SRR8749032	Uninduced	24.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.855
SRR8400027	Control - Root	23.399