Gene detail information of Glyur000008s00001349 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14950.1 | 4.00E-121 | SNARE associated Golgi protein family |
| NR | AGE13753.1 | 4.14E-180 | SNARE [Medicago sativa] |
| COG | YP_004174596.1 | 6.00E-08 | hypothetical protein ANT_19700 [Anaerolinea thermophila UNI-1] |
| Swissprot | tr|Q5XF36|KMS1_ARATH | 5.00E-150 | Vacuole membrane protein KMS1 {ECO:0000303|PubMed:21294794} |
| trEMBL | tr|M1GM70|M1GM70_MEDSA | 2.00E-180 | SNARE {ECO:0000313|EMBL:AGE13753.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 594543 | 599676 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.518 |
| SRR1783600 | control | 6.469 |
| SRR1783602 | moderate drought stress | 7.473 |
| SRR1811619 | moderate drought stress | 7.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.990 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.247 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.452 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.783 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.116 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.606 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.427 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.527 |
| SRR2868004 | Drought Stress (root) | 31.598 |
| SRR2967015 | Control (root) | 24.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.745 |
| SRR9715740 | Leaf | 22.832 |
| SRR9715741 | Leaf | 27.970 |
| SRR9715739 | Root | 7.976 |
| SRR9715742 | Root | 14.339 |
| SRR9715743 | Root | 13.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.635 |
| SRR8749028 | MeJA induced 9h | 23.014 |
| SRR8749029 | MeJA induced 9h | 28.942 |
| SRR8749030 | Uninduced | 58.169 |
| SRR8749031 | Uninduced | 32.114 |
| SRR8749032 | Uninduced | 29.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.366 |
| SRR8400027 | Control - Root | 16.833 |