Gene detail

Gene detail information of Glyur000008s00001346

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein
NR	XP_003592410.1	Lipoxygenase [Medicago truncatula]
Swissprot	tr\|Q9LUW0\|LOX5_ARATH	Linoleate 9S-lipoxygenase 5, chloroplastic
trEMBL	tr\|G7ID71\|G7ID71_MEDTR	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000008s00001346.1
GCAAGGTGTATTTATAAAAGGACTTCTTTNACATTCATAGGCAAACAAACAGAACACAAAGAAGGCTTGACCCTGGGAGTGCTATACCAATTTAGATACTCTACCGAGAAGAATTAATGATGGAGATGAATCAGAGGAGCAAAGTGGTTAAAGGGAGAGTGGTTTTAATGAAGAAGAGCGTGTTGGATTTCCATGACATCAAAGCCAACGTTCTTGATCGAATTCATGAGTTTTTGGGAAAGGGTGTTTCCCTTCAGCTCATTAGTGCTACAACTCCTGACCCAGCAAAGGGACTACGAGGGAAGCATGGAAAGGTGGCATGCTTGGAGAGGTGGATTTCAAGCATTTCATCTTTGACAGCAGCAGCAGACACAGAATTCTCGGTCACATTTGATTGGGATGAGAGCATGGGAGTTCCTGGGGCCTTCATAATCACAAATAATCACCACAGCCAGTTCTACCTCAAGACACTCATCATAGATGACATCCCAGGCCATGGTCCTCTAACTTTTGTCTGTAATTCTTGGGTTTACCCTGCACATTGTTACACCCATGACCGTGTCTTCTTTGCAAATAAGGCTTATCTTCCATGTGAAACACCCGAGCCACTGCGCAAGTTCAGGGAAGAAGAACTGGTGGCCCTCCGTGGAAAAGGGTTCGGGAAACTTGATGAGTGGGACAGAGTCTATGACTATGCATACTACAATGATTTGGGAACTCCAGATGACGGTCCTGAATATGCACGCCCTGTTATTGGAGGATCACAGAAGTTCCCATATCCCCGTAGAGGAAGAACTAGTCGCCCACATACCAAAACAGATCCTAAAACTGAGTCAAGATTGCATCTCCTAAATCTACATATTTATGTTCCAAGAGATGAACGGTTTGCCCATGTCAAGTTCTCAGATTTTCTCGCCTANGCACTCAAATCCGTTGCTCAGGTTTTGCTTCCAGAGATAAGATCTATATGTGACAAAACGATTAATGAGTTTGACACCTTTGAGGACGTACTTGATATTTACGAGGGGAGTTTTAAGCTACCAAGTGGACCTGTACAGAGTAAAATTAGAGAACTTGTTCCCTATGAGATGCTCAGGGAACTTGTTAGGACTGATGGTGAGAGATTCCTTAAATTCCCAGTGCCTGACGTGATCAAAGCGAGNAAGACTGCATGGAGAACAGACGAGGAATTTGGAAGAGAAATGCTTGCTGGGGTTAACCCTGTTATCATCCGCCGTCTCCAAGAATTTCCACCGGCCAGTAAGCTAGACCCAAGTGTCTTTGGAGACCAAAATAGCTCCATCAGAGCAAAGCACATAGAAAATAGTTTAGTTGGGCTCACAATAGATGAGGCTCTTCAAAAAAATAAGCTATATATATTAGATCATCATGACGCTTTGATGCCATACCTAAGTCGAATAAACTCTACCAACACAAAGACTTATGCCACTAGAACACTCCTGTTTCTACAAGAAGATGGTACATTGAAGCCGCTGGCTATTGAACTAAGCTTACCCCATCCACAAGGGGAACAGCATGGAGCTGTCAGCAAAGTTTTTACCCCAGCAAAAGAAGGAGTAGCGGCCTCGGTGTGGCAGCTAGCTAAAGCATATGCTGCTGTGAATGACTCAGGATATCATCAACTGGTTAGCCATTGGTTATGCACTCATGCAGTAATTGAACCGTTCATAATAGCTACAAACAGGCAGTTGAGTGTTCTTCACCCAATACATAAGCTCTTGAAGCCACACTTCAGGGATACAATGCATATAAATGCCTTAGCTCGGCATACACTCATCAATGCTGGAGGGGTACTGGAGAAAACAGTTTTCCCTGGTAAATATGCCTTGGAAATGTCAGCTGTTGTATATAAAAACTGGGTATTCACGGAGCAGGCACTACCAGCTGATCTACTTAAGAGAGGGGTGGCAGTTCCAGATTCAAGCTGCCCTCATGGACTCAAACTTCTCATAGAGGATTACCCGTTTGCTGTTGATGGGCTGGAAATATGGGATGCAATTGAGACCTGGGTGAGTGAATATTGTAGCTTCTACTATACATCTGATGACATGGTTGAGAATGACTCAGAACTCCAGTGCTGGTGGGAAGAACTCCGCAATGAGGGTCACGGTGACATAAAAGATAGGCCATGGTGGCCAGAGATGAAGACTAGAATTGAGCTCATTCAATCATGCACCATCATCATCTGGGTGGCTTCTGCCTTCCATGCAGCTGTGAACTTTGGACAATACCCTTATGCTGGTTACCTCCCTAATCGTCCAACAGTGAGTCGCAGGTTCATGCCGGAGCCAGGCACCCCAGAGTATGAAGAGCTTGAGTCAGACCCTGAGTTGGCATTCCTGAAAACAATCACAGCCCAGTTCCAAACTCTCCTTGGTGTGTCATTGATTGAAGTTCTATCCAGGCATTCAACTGAAGAAGTTTACCTTGGACAGACAGATAACCCTGACTGGACTTTAGATGCTGAACCATTGGCAGCATTCGAGCGGTTTTCACAGAAGCTGTTGGAGATTGAGAACAATATCATGNAAAGGAACAAGGACCCAAGATTGAAAAACAGAAACGGGCCAGTGAAGTTACCTTATACCCTACTCTATCCCAATACCTCAGATTATTCTAGGGAAGGGGGACTCACTGGGAAGGGAATCCCCAACAGTATATCCATCTAAAACCACTCTGCTACTTTCTATCCCCTCATTGAATTCTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	564515	582938	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001346.1	PF01477.18	PLAT	58	151	6.70E-20
Glyur000008s00001346.1	PF00305.14	Lipoxygenase	162	835	1.1e-312

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	72.208
SRR1783600	control	72.298
SRR1783602	moderate drought stress	64.072
SRR1811619	moderate drought stress	63.520

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.835
DRR006520	Root Summer glycyrrhizin high producing strain	18.130
DRR006521	Root Winter glycyrrhizin high producing strain	0.188
DRR006522	Root Winter glycyrrhizin high producing strain	0.187
DRR006523	Root Summer glycyrrhizin low producing strain	3.638
DRR006524	Root Summer glycyrrhizin low producing strain	3.808
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.263
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	114.671
SRR2868004	Drought Stress (root)	114.760
SRR2967015	Control (root)	98.171

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.880
SRR9715740	Leaf	38.219
SRR9715741	Leaf	66.216
SRR9715739	Root	12.472
SRR9715742	Root	73.785
SRR9715743	Root	56.802

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.138
SRR8749028	MeJA induced 9h	0.194
SRR8749029	MeJA induced 9h	0.211
SRR8749030	Uninduced	0.136
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	0.231

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.969
SRR8400027	Control - Root	96.667