Gene detail information of Glyur000008s00001345 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03130.1 | 7.00E-77 | photosystem I subunit D-2 |
| NR | XP_010277521.1 | 6.57E-127 | PREDICTED: photosystem I reaction center subunit II, chloroplastic [Nelumbo nucifera] |
| Swissprot | tr|P32869|PSAD_CUCSA | 5.00E-120 | Photosystem I reaction center subunit II, chloroplastic (Precursor) |
| trEMBL | tr|I1NGD2|I1NGD2_SOYBN | 1.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G28300.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 562725 | 563363 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001345.1 | PF02531.11 | PsaD | 75 | 211 | 3.40E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.575 |
| SRR1783600 | control | 0.577 |
| SRR1783602 | moderate drought stress | 1.239 |
| SRR1811619 | moderate drought stress | 1.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.721 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.285 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.170 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.486 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1217.086 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1210.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 35.248 |
| SRR2868004 | Drought Stress (root) | 48.758 |
| SRR2967015 | Control (root) | 44.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 672.845 |
| SRR9715740 | Leaf | 656.617 |
| SRR9715741 | Leaf | 599.764 |
| SRR9715739 | Root | 1.934 |
| SRR9715742 | Root | 8.371 |
| SRR9715743 | Root | 5.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.245 |
| SRR8749028 | MeJA induced 9h | 28.401 |
| SRR8749029 | MeJA induced 9h | 14.498 |
| SRR8749030 | Uninduced | 17.012 |
| SRR8749031 | Uninduced | 3.412 |
| SRR8749032 | Uninduced | 17.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.450 |
| SRR8400027 | Control - Root | 11.237 |