Gene detail information of Glyur000008s00001342 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32150.1 | 3.00E-87 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| NR | XP_004496742.1 | 4.36E-150 | PREDICTED: uncharacterized protein C24B11.05-like [Cicer arietinum] |
| COG | YP_003496862.1 | 3.00E-25 | pyrimidine 5'-nucleotidase [Deferribacter desulfuricans SSM1] |
| trEMBL | tr|I1NGD4|I1NGD4_SOYBN | 3.00E-148 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G28320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 555860 | 558081 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001342.1 | PF13419.1 | HAD_2 | 13 | 235 | 8.40E-21 |
| Glyur000008s00001342.2 | PF13419.1 | HAD_2 | 13 | 205 | 4.60E-22 |
| Glyur000008s00001342.3 | PF13419.1 | HAD_2 | 13 | 190 | 1.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.893 |
| SRR1783600 | control | 29.111 |
| SRR1783602 | moderate drought stress | 28.722 |
| SRR1811619 | moderate drought stress | 28.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 157.842 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 155.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.319 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.988 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 151.554 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 149.787 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 184.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 186.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 60.738 |
| SRR2868004 | Drought Stress (root) | 133.243 |
| SRR2967015 | Control (root) | 239.758 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 597.859 |
| SRR9715740 | Leaf | 324.352 |
| SRR9715741 | Leaf | 530.039 |
| SRR9715739 | Root | 48.445 |
| SRR9715742 | Root | 115.799 |
| SRR9715743 | Root | 98.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 263.559 |
| SRR8749028 | MeJA induced 9h | 195.157 |
| SRR8749029 | MeJA induced 9h | 364.580 |
| SRR8749030 | Uninduced | 291.387 |
| SRR8749031 | Uninduced | 741.016 |
| SRR8749032 | Uninduced | 582.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.046 |
| SRR8400027 | Control - Root | 46.278 |