Gene detail

Gene detail information of Glyur000008s00001340

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G31690.1	0	Copper amine oxidase family protein
NR	XP_003592404.1	0	Primary amine oxidase [Medicago truncatula]
COG	YP_005086886.1	4.00E-111	tyramine oxidase [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|Q43077\|AMO_PEA	0	Primary amine oxidase (Precursor)
trEMBL	tr\|G7ID65\|G7ID65_MEDTR	0	Amine oxidase {ECO:0000256\|RuleBase:RU000672}

Sequence

Transcript Sequence

>Glyur000008s00001340.1
ATGAAGGTGTGGTTCTATCGGCTCGATAGAACGATGAAGATGTTGGTGCTCTTGTTTGTCCTCGTGCTATTTTGGGGCTCTACAGAATGCACCAATATTCCTCACCCACTTGACCCTCTAACCCCTTCCGAGATCAAACTTGTCCAAACCATATATAGTCCGAAAATCATACCCAACAACCTCAAGCACCGGTCACAACAACCTCACCTTCCAATACGATTGGACGAGCCCGACAAGACCGCAATCCTATCATGGCTATCCTCAAACAACCCAAAAAAGACCAAACCCAAAACTACCCTTCCACCACCTCGCCGAGCCTTCGTCATAGCGAGGTTCCAAAAACAGTCCCTGGAAATCACCGTAGATTTTTCAACCCGCTCAATAATCTCAACCAAAGTCTACCAAGGGCATGGCTATTCTATGCTCACCTTTGGCGAACAAACTGTTGCGTCACAGTTACCGTTCGGTTATGGGCCGTTTAAGGGGTCGTTGAAGAAAAGGGGTCTCAACATATCGCAGGTTCTGTGCGCCACCTTCACGGTTGGTTGGTTTGGAGAGGAAAAGACCAAAAGGANTGTGAAGGTTAAGTGTTATTACACAAATGGCACTGCTAATTTGTATGCGAGGCCGTTGNAGGGTGTGGCAGCGGTGGTTGACCTTGACGATATGAAAATTGTTGGTTACTCTGATAGATATGTGGTTCCGGTGCCGAAAGCAGAGGGCACTGAGTACCGAGAGTCAAAGATGAAGCCACCCTTTGGTCCAAAGCTTAAGGGCATAGGTTTCCATTTGGGATTCGACATTCAAGTTGGCCCAATAATATCTCTGGCATCAATATATGATCTCCAAAAGCAGAAATATCGCCAAGTACTATACAAAGGATTCATATCAGAGCTGTTTGTGCCATACCAAGACCCAACAGAGGAATGGTATTACACAACCTACTTCGATTGTGGCGAATATGGCTTTGGACAGTCAATGTCTTCACTGCAGCCTTTGAACGATTGCCCTGCCAATGCTGTGTTCCTAGACGCATACTACTCTGCTTCAGATGGCACCCCTGTAAAGATACCTAATGCCTTCTGCATATTTGACAGGTATGCTGGTGATATCATGTGGCGTCACACAGAAATTGCAATCCCAAATGAAGTGATAACTGAGGTCAGGTCAGATGTAAGCCTAGTAGTGAGAGCGGTTTCAACTGTGGGAAACTATGATTATGTCATAGATTGGGAGTTTAAGCCAAGTGGTAGCATCAAACTTGGGATTGGGCTTACTGGGATATTGGGGATTAAGGCAGGGACATACACCAACACTGATGAAATCAAAGAAGAGATCTACGGCACATTGCTTGCTGATAATATCATTGGTGTCTACCATGACCACTTCTTGACCTATTATCTTGACCTTGACATTGATGGTGAGTCCAACTCCTTTGTCAAGACTAGTTTGGAGACTGTGAGAGTGAAAGATCACACAACACCCAGGAAAAGTTATTGGAGGGTTGTAAGTGAAACAGCCAAAACAGAAGCTGATGCCAGGGTCAACCTGGGGTTCAAGCCTTCTGAGCTACTAGTGGTAAATCCTAATAAGAAGACAAAACAAGGAAATAAAATTGGGTACCGTTTGCTTNCGGGCTCAGTGGTGCATCCACTGTTGCTAACCAATGATTATCCACAAATCAGAGCTGCCTTCACCAATTATAATGTATGGNTCACACCATACAACAAAACTGAGAAATGGGTAGGAGGATTATATGTTGACCACAGCAGAGGCGATGATACTTTAGCTGTTTGGAGTCTCAGGGATAGGGGGATTGAGAACAAGGACATAGTATTATGGTACACCATGGGGTTTCATCATGTTCCTTCTCAGGAAGATTTTCCAGTTATGCCAACGTGGAGTGGTGGGTTTGAGCTGAGGCCAACCAATTTCTTCGAGAGCAACCCGGTCCTTAAAACAAAATCGCCAAAGCCTGTGCACTGGCTTAATTGCACTTCTCAACATTAGCTGGGTATGCATTTGCTGAACCAACTCAACGAAATTTGAAGGTTTCTTGTCTTCTTCATATTTGTAGTTTCTTCATTTTTGCCAATTCAGTTAATAAAGAAAATGCTATTACTTTTTTGTTTAAATAAGTTTTATGTCCCTATAATATATCCGTTTTTTCATTTTGGTCCTTATAAAATATATTTTACTATTTGATTCCTCATAATTTTTTTTTTCCGTTTTAGTTCCCGCCGTCAGTCTAGGTCTGTTAACTATTGAGGTGGCTAACAGATGTCCACCTCAACATTAATATTACGCGACACTACATAATAACACGTAGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	543155	548373	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00276	AOC3, AOC2, tynA	EC:1.4.3.21	Glycine, serine and threonine metabolism	map00260
			Tyrosine metabolism	map00350
			Phenylalanine metabolism	map00360
			beta-Alanine metabolism	map00410
			Isoquinoline alkaloid biosynthesis	map00950
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process

GO:0009308 amine metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0008131 primary amine oxidase activity

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001340.1	PF02727.11	Cu_amine_oxidN2	35	132	7.50E-16
Glyur000008s00001340.1	PF02728.11	Cu_amine_oxidN3	141	237	1.80E-23
Glyur000008s00001340.1	PF01179.15	Cu_amine_oxid	261	656	2.70E-124

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.754
SRR1783600	control	0.688
SRR1783602	moderate drought stress	2.113
SRR1811619	moderate drought stress	2.260

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.852
DRR006520	Root Summer glycyrrhizin high producing strain	0.865
DRR006521	Root Winter glycyrrhizin high producing strain	0.515
DRR006522	Root Winter glycyrrhizin high producing strain	0.436
DRR006523	Root Summer glycyrrhizin low producing strain	1.627
DRR006524	Root Summer glycyrrhizin low producing strain	1.574
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.548
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.377

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.808
SRR2868004	Drought Stress (root)	2.966
SRR2967015	Control (root)	2.938

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.994
SRR9715740	Leaf	9.369
SRR9715741	Leaf	6.739
SRR9715739	Root	0.221
SRR9715742	Root	1.122
SRR9715743	Root	1.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.699
SRR8749028	MeJA induced 9h	0.317
SRR8749029	MeJA induced 9h	0.530
SRR8749030	Uninduced	0.331
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.146

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.127
SRR8400027	Control - Root	4.161