Gene detail

Gene detail information of Glyur000008s00001336

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05370.1	4.00E-133	Sec14p-like phosphatidylinositol transfer family protein
NR	XP_007143251.1	0	hypothetical protein PHAVU_007G056700g [Phaseolus vulgaris]
Swissprot	tr\|Q9SCU1\|PATL6_ARATH	5.00E-07	Patellin-6
trEMBL	tr\|V7BCF6\|V7BCF6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15245.1}

Sequence

Transcript Sequence

>Glyur000008s00001336.1
CAAGTTCCTTCACTCCATCACAGAGACATTACCTTGCATTCAACGTTCTCTCTTTCCTCTGAGTTCAGCAAGGAAAGCTTTATATTTATGGTTGCGTGAAGCAGAAGTTTGGAATATTAGTCCTTGTGTTTCTCTTGTTGGAGATTTGGTAATTATTGCAAAGCGCATCACTTTCAAAGTTAGTGTTTCTCGAAATGGGGAAGAAAGAACAACTGAGAGATAACGATAACAAGGAGACGGCGAGAGTTGAAGCCGTTCTTCAACTCATCAGAAAACAAACCCCTCTCACTGTGAAGCAGGAGAAGTTCTGCAACTATGCTTGTGTGAAACGATTTCTGAAAGCGAAGGGGGATAATGTGAAAANAGCTGCAAAGCAACTAAGGGCTTGCCTTTCATGGAGAGAGAGTATTGTCACTGATCAATTGATAGCGGATGATTTCTCAGCTGAATTGGCTGAGGGGTTGGCGTATGTGGCTGGTCATGACGACGAATCCAGACCCGTTGTGATTTTCCGGATGAAGCAAGACTATCAGAAGTTACATTCTCAGAAACTGTTCACTCGTTTGCTGGCGTTCACACTTGAGGTGGCCATTTCGTCCATGCCAAAAAACGTAGAACAGTTTGTCATGCTTTTCGACGCAAGCTTTTACAGATCAGCANCTGCTTTTATGAACTTATTGCTAGCAGCACTGAAAATTGTGGCGGAGTACTACCCTGGCCGGCTATGCAAAGCGTTTGTCATAGACCCTCCCTCGCTTTTCGCTTACTTGTGGAAGGGTGTACGGCCTTTCGTTGAGCTATCGGCGTGGACGACGGTGGTATCATCGTTGGATTTCGAAGAANCACTGGACTTCAACGACTTCTCAGCGTACCCTCGGGCGTCGTCCCTCCGATTCGACCCGTCGACGGTGAAATCGACGGCGAAGATCGGGTCGTGCTCCTCTTCCCGGTTCTCCTTCACGGTATCCCACCACCTGGACTCGCTGAAGCCGTGGTATCTCAGCCTCACGGACACGTCATCATCGAAGGTGGGACCCACAAGCCCCTCGCCCGCACTGATCTCCCCACTAAACGCGCGGTCACTCTCCTTCGCCTCCCCCATCGCACGCACCCCGCGCTGCCCTCCAGCCTCCAGGAAGGGCCTCTTCCCCTCCACACCGCTGCCGCAGCGCGTCACGGCGCCTCACCGGACGACGTCGTTCCTCCAGTCGCCGGCGACGTTTTTCCGGCGGGAGAGCGGGAAGGTTGAGAGGTGCCGGGAATCGTTCTTGCCGTACGTGAAGTTCCACAGGAGGCCGTACGACGAGATGGTGTACAGGTCAAAGATGAGGCCCCCACTCGGTGGCCTCATCTCCATCGTTTCCCCACACCTCAGACGGCGTCACATTTCCGTTTCTCAGCGTTTCTAATAATTCTAAAACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	517587	521357	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001336.1	PF00650.15	CRAL_TRIO	86	200	2.30E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.931
SRR1783600	control	11.128
SRR1783602	moderate drought stress	9.174
SRR1811619	moderate drought stress	9.289

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.656
DRR006520	Root Summer glycyrrhizin high producing strain	14.772
DRR006521	Root Winter glycyrrhizin high producing strain	4.546
DRR006522	Root Winter glycyrrhizin high producing strain	4.490
DRR006523	Root Summer glycyrrhizin low producing strain	15.711
DRR006524	Root Summer glycyrrhizin low producing strain	16.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.819
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.810

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.794
SRR2868004	Drought Stress (root)	12.200
SRR2967015	Control (root)	14.155

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.842
SRR9715740	Leaf	1.420
SRR9715741	Leaf	2.971
SRR9715739	Root	20.572
SRR9715742	Root	28.832
SRR9715743	Root	28.777

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.190
SRR8749028	MeJA induced 9h	22.247
SRR8749029	MeJA induced 9h	16.909
SRR8749030	Uninduced	11.836
SRR8749031	Uninduced	0.765
SRR8749032	Uninduced	1.730

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.508
SRR8400027	Control - Root	23.039