Gene detail

Gene detail information of Glyur000008s00001330.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14920.1	0	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
NR	XP_004496730.1	0	PREDICTED: uncharacterized protein LOC101490910 isoform X4 [Cicer arietinum]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	1.00E-09	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|A0A072VQ30\|A0A072VQ30_MEDTR	0	RING/FYVE/PHD zinc finger protein, putative {ECO:0000313\|EMBL:KEH43887.1}

Sequence

Transcript Sequence

>Glyur000008s00001330.1
GGATAATCTTCTCTCACATGAAGTCATACAAGAATTTCTGATTACGCAAAACAATCCAAGATGCGTGCATCATGAGTCATCGTCGTCATTCGTCACAACCTGTTTCCATTTCCCTCGGTTTTTCCGATTCCTAACCCAGAACGGCAAACTGTAGAAACANCTACCAACTCCACCTTACCACCGCTCTGATCATGCCACGTCAACGAAGTATCACAACAATACAGCGTGGCACCATCAGGAACGTCCACGGTGCCAGTAATAAGGGATTTTGGAGGGAAATTAAATTCTACGTATCTACGTAATACGTATTCATTCATTGTCCGGGGAAGAAAGAAAGGAAAAAAAAAAAAGAAACGTATAAATAAAGAGAAAATAACAATAAAAAACAGAAGAAAGAGCACCATGGTTTTGTTAATTCGCATTTCATAAAGCGGCACTGCAAATCCCAACCCCAATTTCTCTCTCTTACGCTCTCCCTCTCTCTCCTCTTTCTCTCACACTCGTGTCGTCCTCCGATCANTTTCGGTTTCGCCGGCGAATTGCGTCACTGATCGGCGTCACCGAGCGAGGGTTTTTATTTTTTGGTGAGGTAAGNTTCTCGACCAAAACAAAAATCTTACTAATTTTTTTTTACCGTTTTGGCCGGTTTTCTTCTGGCGAGGAGAAGACTTTGTGGCATTCCGATTGGTTTTTGCTTCAGATCTGGGAGTATATGCTGGNGGATTTTTGCTGACTTTGATTTAGGGTTTTCTGTGCTGGATTAGGTTTGAGATTTTGTGCTGAATTATTGGGGATGATTTTTTTGGGGATTTAGGTTTTTCTTCTCCTTTTGGCTGGATGGAACCGGGCACGAGAGTAGCTGGCCCTTCCGGGGTTGTGGTGAAGAATAGGAGCTCTTCGGGGTGTTTGATTGTTAAGAAGAAAGGGGGTGGTGGGGTTGGTGGTTCTTCGAGCTCCCGGAAGCAGTATGAATCGAAGAAAGTGAGGAAGAAGCCCAAGGCCGAATCATCAAGTGATTCGGAATCAAGCGATGAGTTACCGATGCCTCCTGCTAGGAGGCTTGGCCCTGAGACCATTCGAGTCTGTAATGGTCTGTCTGCTCTTGAGCGGGGTGTGGTCGGTAGCGGTGAAATCAGTAGGAAGAGGGAGAGAATGGAGCAAGTTAGGCGTAATGGGAATGACATGGTCGAGGAGAATGGCCTGGAGAGGAGGGAAAATAAACGTAGTAAGTTGGATGTGTTTGAATTCGATGAATATGATGGTATGGATGTGGAAATAATGAGAAGGAGGCATTTTGATAATAATGGCGGTGGTTTAGGAGTAGGAAGGTTTATGGGAACAATGCATGCTGCAAGAGGTAGCATTGATAGGGAATTTGNAACTGGTTCTAGCAGACACATTGTGGATAAGAGAAAAAATTCCTACTATGACAGGGCAAGTGGCTTGCATCTTGGAGATAGTGTTGACCGTAGTAGGTTCAAGAGGAAAAACGATGGAGCTCAGCATCCTCTACCCTTGCTGAAGGAAAAGTTTAATTCTGATGAGTCCATTAGAGTTCAGGGGAAAAATGGTGTTTTGAAGGTGATGGTTAATAAGAAGAAAGTGGGTGGGCCACTAGAACACTATGATCATCGTAAACCTGTAGAAAGCAGACAAAGTTTGAGGGCTGAGGGCACTGCCAAGAGGAATGTTCTGGTCCATCCTTCATCCTNCTTGGAAACAGAACCTGCTGAGAAACAGGGTTTACTTGTTAGGCCAGAGAAGAAACAGATAGCAACGAGAAAATCCTTGTCAAGTAAGGACAGTAAGGGTGATGAGCAGGATTCAGATAACAGTGACACATCGTTGAATCCGGGAGTAAAAAATATTAAAGCTCGCAAGTCTTCAAAAAAGATAACCTCTGAAAATGAGCAGACGCCTGTGCATGACAAACTCCCAACTACAAAAACAAAAGAAGGAAAAATCAAGCGTGGTAGTGGAACAGAAAAACAGAAACTACGAGAACAAATACGGGAGATGCTTCTGAATGCAGGTTGGACCATAGACTATCGCCCACGAAGGAATAGAGACTATTTAGATGCAGTTTACATTAATCCTGGGGGTACAGCCTATTGGTCTATCATCAAAGCCTATGATGCACTTCAAAAGCAATTGAATGATGATGATCATGAGGCCAAGCCCAAAGGGGAGAGTTCTTTTGCTCCTATCTCTAATGATGTGCTCAGTCAATTGACAAGGAAAACTCGGAAGAAGATGGAGAAAGANTTGAAGAAAAAGCAAAGAGATGATAGTGATAGTGGAAAAGAACCACGGCGTAAAAGAATTACTGGCAGAAAGCATGATATGTATGGCATCGATAGTGATAGCTATGAAGAGAAGTTAAGCTCCTTTATAAAGCAAGGAAGTAAGTCAATGAAAACTAAACTGACTGAAAATGCTGTTACTGGTGGTAGCTCTAAAAGCCAGAACGCTACTCATCACTCCAATGATGGAACTGAAAAGGCATTCTCTGAAAACGATCCTCATCTCCTACACGGAAGGAAAAGTAGAAAACATGGAAGGTGCACTTTGTTAGTTCGTAGTTCTAACAAGGGGTTGAATTCAGACTCTGATGACTTTGTTCCATATATGGGCAAACGAACAGTGCTTTCCTGGTTGGTTGACTCNGGGATAGTACAAGTAAGTCAAAAGGTTCAGTACCGTAGGAGGAAGCGAGTAATGCTGGAGGGATGGATCACAAAAGAAGGCATTCATTGTGGCTGCTGTAGTAAGATCCTCACGGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCGGCAGCCATATCAAAACATATATTTGGATTCTGGAGTTTCTCTTCTACAGTGCCAGATAGATGCATGGGACAGACAAGAGAATTCTGGGAAAATCAGTTTCCATTCAGTAGATATTGATGGTAATGATCCAAATGATGATACTTGTGGTATTTGCGGAGATGGAGGGGATTTAATCTGTTGNGATGGTTGTCCATCAACATTTCATCAGAGTTGCTTGGATATACAGATGCTTCCCCCTGGGGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGACTAGCCAGTGGAACTAATGACGAAGATGATGATGCAATTGTAAATGCCCTACATACTTGTGACTTATGCGAGAAAAAATATCATGACAGTTGTACTAAGGATACGGGTGCCCTTCCTACCAACTCTGATATGTCAGAGCCTTCCTTTTGTGGAAAAGGCTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACATTGGTACCAAGCATGAACTTGATGCAGGCTTTACATGGTCTCTTATTCGTAGAACAGATGAGGATTCAGAGGCAGCTAGTAGGGGAATTACCCAGAGGGTGGAATGTAACTCCAAGCTGGCTGTTGCACTGACTGTGATGGATGAATGCTTTTTACCCGTTGTTGATAGGAGGAGTGGGATCAATTTAATCCATAATGTTTTATATAATAGTGGGTCAAATTTCAGTCGGTTGAATTATACTGGCTTTTATACTGCTATTTTGGAGCGAGGGGATGAAATAATTTCTGCAGCATCTATCAGGTTCCATGGGACTAAGTTAGCAGAGATGCCATTCATTGGAACTCGCCATATATATAGGCATCAGGGAATGTGCCGCCGGCTTTTTTCTGCCATTGAACTGGCTCTTTGCTCTTTGAAGGTTGAGAAACTGGTTATTCCTGCAATTTCTGAACTCATTCACACATGGACAACAGTTTTTGGCTTCACACATCTTGAGGAATCACTCAGGCAAGAAATGAGGTCATTGAATATGTTGGTCTTCCCTGGTATTGATATGTTACAGAAGCTTCTAGTGGAGCAAGGAAAACTTGAGAGTAATACAACTACTGGTGCTGAGAAAACTGAAAATGGAGATGTGGTTTTTGCTAAGCCCACTATGGTCAACAGGTTAGATATGGATTCCTCAGCTCTGCAAGATCCTCACGAAAGTGAGGATGCTAATTCAAATCCTGTTAATGAGATAAACAATGAATGTAGTGATGCTTCTCAAGAGTTAAACAATCAAGTTTTGAATGGCAGAACTGTATGCTCCAAATCTCATTCTGAGGAAAGATTATCTGATTCTGTTTCAGAAAATTGTGCTTCTCCTTCTAATACTAGTCATGGGGTACTCGAAANGAAAAATAAAATAGNAATGACTTCTGTCAATGATAAATTGCATCCTTCACCCAAATGTCAACTCATTTCACCAAATGACATTTCTACAACTGGTCTTCCATCAGATTACTCAGATTGCNGTGAAATTCCAGCTTTGGGTCAGGAAACTGCTTGTTCTGACCCTGATACTGCAAAAAACCTGGTTGAGCCTGTTTCTGACAGGAAATGTCATGCTCTCACTGATATGGATTGTGATTCATCAGACCTTGACAGAAATCCAGTATTGGACTCTCAAGTGGCGGATAATACTTTGTCCTTTAAAGAGGTTGATATGAATGATGCCCATGATGAGGTTCTTGAAGCTGGTCCTTTAGTGAATTTATCTCAAGAGAATATTGCCAGGGAGAATAATGAAAATGTAGATATCTCTGGTTCTGTTCTTAATCGTGTTAGTGAGAATTCCTTGCAGGTAAGATCTGATCGTAATGGTGAAAATGAACATGAGAGGGAAAATAATTTACATTTGGGCACAGAAGTTGCTTCAAATGAAATGCGTTTTGATGAAACTGATCTAAATGCTTCTGGTGATAGTTCTGAGACAGATCCAGCATAAGAGAATGGTTTAGTCTAATACCTCTAATGCCTTCAGTTCTACAGCTCATGTGACTCTTCACACAATTTTTCTTTCAAAGATTCAGTGCCTTGTATTCAATCAATTTTCAAGGCTTTGGAACTTATATGTCATGCTTTAATCTGGATAGTATGAAAAGGTTATACCAATTTCAAGGGAAATAGTAATCGGTCCCTTGTGTTGTTGTTTAAGTATGAATTTCTTAAGGTTCTAAGTTAACTTCATTTCCCGTGAATGTTTCTTCTGCCAAAATGCTTCAAGGATGCTTTTGGCTCAAGTTGTGTCCTTATGTGGTCGAATGGGTGAAGTTGCTTGCCTGTAATGTGCACCCATCCTTCATAGTTCGTGCTCAAGCAGATCCTTTGAGTGTATTATATATGTGTTTCTCATTGTTTGTATCTGAAAATCTGGTGGAGTGGATTTGGCTTCCTTTTCAAGCCTTGTGTGCCATTCACTGTTAGTTCACCGTAATTCATCACATGGCATCAGCAGTGATAGATACTTGGAACAATTTGTGTTGATTGGCAGAGTATTCTTATGGACTCGTCTACATTTTGATGGGCCATTGATGGTAACAGGAAATTCAATTCCAATTCTAGCACCATCAACTCAGCATTGTGACCCATGTCTGCCCAAGCTCAATTCAGAAATTTGGTCATGATGTTCCATTTTTGGGGGCGCTAATGCTTTCACCAAAACTCAAAGGTTTGTCCTCTGCTAAAATTGAAGGCGTTTGAATAGGATTTTCTATTTTTCTTATAGATCAGAAACCTAATTTGTGGGTGCACTGTGCAGGCCAGTAAATAACGATTATGCTTGTAGGATGTAAAGACCTTTCTTTGTAAAGGATTTGTTGTCTGTGTTGGTGAGGTTTTAATTTTGTTTTCTTTTTCTTTTTGTAATTAAGGTTAAGGTAATGTTTGATGTCAAAATGGCAATTGATGCCGTCTCGAATAATATTCCTGTACTTTTGTCGTCGCTTAAAAATTATTATAGCTCCATTTCTATTTTGAGAGGTTTTGGGTATAT

Protein Sequence

>Glyur000008s00001330.1
MEPGTRVAGPSGVVVKNRSSSGCLIVKKKGGGGVGGSSSSRKQYESKKVRKKPKAESSSDSESSDELPMPPARRLGPETIRVCNGLSALERGVVGSGEISRKRERMEQVRRNGNDMVEENGLERRENKRSKLDVFEFDEYDGMDVEIMRRRHFDNNGGGLGVGRFMGTMHAARGSIDREFXTGSSRHIVDKRKNSYYDRASGLHLGDSVDRSRFKRKNDGAQHPLPLLKEKFNSDESIRVQGKNGVLKVMVNKKKVGGPLEHYDHRKPVESRQSLRAEGTAKRNVLVHPSSXLETEPAEKQGLLVRPEKKQIATRKSLSSKDSKGDEQDSDNSDTSLNPGVKNIKARKSSKKITSENEQTPVHDKLPTTKTKEGKIKRGSGTEKQKLREQIREMLLNAGWTIDYRPRRNRDYLDAVYINPGGTAYWSIIKAYDALQKQLNDDDHEAKPKGESSFAPISNDVLSQLTRKTRKKMEKXLKKKQRDDSDSGKEPRRKRITGRKHDMYGIDSDSYEEKLSSFIKQGSKSMKTKLTENAVTGGSSKSQNATHHSNDGTEKAFSENDPHLLHGRKSRKHGRCTLLVRSSNKGLNSDSDDFVPYMGKRTVLSWLVDSGIVQVSQKVQYRRRKRVMLEGWITKEGIHCGCCSKILTVSKFELHAGSKLRQPYQNIYLDSGVSLLQCQIDAWDRQENSGKISFHSVDIDGNDPNDDTCGICGDGGDLICXDGCPSTFHQSCLDIQMLPPGEWHCPNCTCKFCGLASGTNDEDDDAIVNALHTCDLCEKKYHDSCTKDTGALPTNSDMSEPSFCGKGCKELFEHLKKYIGTKHELDAGFTWSLIRRTDEDSEAASRGITQRVECNSKLAVALTVMDECFLPVVDRRSGINLIHNVLYNSGSNFSRLNYTGFYTAILERGDEIISAASIRFHGTKLAEMPFIGTRHIYRHQGMCRRLFSAIELALCSLKVEKLVIPAISELIHTWTTVFGFTHLEESLRQEMRSLNMLVFPGIDMLQKLLVEQGKLESNTTTGAEKTENGDVVFAKPTMVNRLDMDSSALQDPHESEDANSNPVNEINNECSDASQELNNQVLNGRTVCSKSHSEERLSDSVSENCASPSNTSHGVLEXKNKIXMTSVNDKLHPSPKCQLISPNDISTTGLPSDYSDCXEIPALGQETACSDPDTAKNLVEPVSDRKCHALTDMDCDSSDLDRNPVLDSQVADNTLSFKEVDMNDAHDEVLEAGPLVNLSQENIARENNENVDISGSVLNRVSENSLQVRSDRNGENEHERENNLHLGTEVASNEMRFDETDLNASGDSSETDPA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	469418	477539	-

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001330.1	PF00628.24	PHD	709	751	1.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.382
SRR1783600	control	10.514
SRR1783602	moderate drought stress	11.149
SRR1811619	moderate drought stress	11.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.153
DRR006520	Root Summer glycyrrhizin high producing strain	12.045
DRR006521	Root Winter glycyrrhizin high producing strain	8.851
DRR006522	Root Winter glycyrrhizin high producing strain	8.743
DRR006523	Root Summer glycyrrhizin low producing strain	12.167
DRR006524	Root Summer glycyrrhizin low producing strain	11.844
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.372
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.270

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.465
SRR2868004	Drought Stress (root)	30.782
SRR2967015	Control (root)	31.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.338
SRR9715740	Leaf	9.460
SRR9715741	Leaf	10.998
SRR9715739	Root	2.849
SRR9715742	Root	18.200
SRR9715743	Root	15.628

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.610
SRR8749028	MeJA induced 9h	26.997
SRR8749029	MeJA induced 9h	11.272
SRR8749030	Uninduced	8.162
SRR8749031	Uninduced	12.803
SRR8749032	Uninduced	8.241

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.176
SRR8400027	Control - Root	27.960