Gene detail

Gene detail information of Glyur000008s00001329.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22425.2	2.00E-105	imidazoleglycerol-phosphate dehydratase
NR	AFK47064.1	8.78E-175	unknown [Lotus japonicus]
COG	YP_007171000.1	5.00E-97	imidazoleglycerol-phosphate dehydratase [Dactylococcopsis salina PCC 8305]
Swissprot	tr\|Q43072\|HIS7_PEA	4.00E-146	Imidazoleglycerol-phosphate dehydratase
trEMBL	tr\|I3T3H2\|I3T3H2_LOTJA	3.00E-175	Imidazoleglycerol-phosphate dehydratase {ECO:0000256\|RuleBase:RU000598}

Sequence

Transcript Sequence

>Glyur000008s00001329.1
CAAACACCCAGAGGACAGGAACGGAGACCCGACCCCCTAATCCCTAACACCTCTTTGAAACTGAGTGTTGGCCGCATCAGCCACCAGCGTCNGTGAGGTCTCCGCCGGCGGCGCCTCCCACATAGCCAGTCTAGCAGTACCATTCCGCCCAGTCTAGCAGTATAGTTACTTTGAGTTTAAAAATCTATAGTTCGATTTCACTCACACAATCTAAATGGAGCTTACTGCAACTCAATGGCATCCAAAATGCCTTCCATGTGTGTGGCTGAAATCTAGGGTTTGGGGTTTTCAGAGAACACCGAACCTAAGGTGCCCACCTTTCCAAGCTTCAATCTTTTCAGTCAATCCTCGCAATCTCACCCGAATGGATCCTCCCAGAACCATCTCCACCGCTGCTTTGGTGGGAAACAACACTTCAGCCACAACACCTTTACCAGTTGACTCAGGTGTTAGAATTGGAGAAGTGAAAAGGGTCACCAAGGAGACCAATGTATCAGTCAAAATAAACTTGGATGGATCTGGTGTTGCTGATGCCAGCAGTGGAATTCCCTTCCTTGATCATATGCTTGATCAACTTGCTTCACACGGGCTGTTCGATGTGCACGTAAAGGCCACAGGTGACATACACATTGATGACCATCACACAAATGAAGATATCGCTCTTGCTATTGGAACGGCATTGCTGCAGGCTCTTGGTGATAGGAAGGGTATTAACCGGTTTGGTAACTTTTCTGCTCCACTTGATGAAGCNTTGATACACGTTTCTCTGGATTTGTCTGGTCGACCACATCTAAGTTATGATTTGGACATACCCACTCAGAGGGTTGGGACATATGACACTCAGTTGGTGGAGCATTTTTTCCAGTCATTAGTGAACACATCTGGTATGACACTTCACATTCGACAGCTTGCTGGAAAAAATTCCCATCATATCATTGAGGCAACCTTTAAAGCTTTTGCTAGGGCTCTTCGACAAGCTACAGAGTATGATCCACGTCGTCTTGGAACAGTACCAAGTTCAAAAGGGGTTCTGTCACGTAGTTAATATCTTCAGCGGGTATCCATAATTGGANTGAGCTACTAGTATAAACGGACCTCCATAGTTCTTCAAGCATATGCAACCATAATGGTCCTTGCCCGGGGGCTTCACAATGACGTTGCTGTAGGCCAGTATTTGTTGTGACATAAGTTACTTAGCCTCTGTAAACATTGTTGTAGTACGTACATTTATTCTACAAGTTCAAATCATTTTTCTAGTGCCTTTCTTTGTACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	464698	468006	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01693	hisB	EC:4.2.1.19	Biosynthesis of amino acids	map01230
			Histidine metabolism	map00340

Gene Ontology

biological_process
GO:0000105 histidine biosynthetic process

molecular_function
GO:0004424 imidazoleglycerol-phosphate dehydratase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001329.1	PF00475.13	IGPD	110	253	2.20E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	57.869
SRR1783600	control	58.223
SRR1783602	moderate drought stress	40.354
SRR1811619	moderate drought stress	40.118

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.662
DRR006520	Root Summer glycyrrhizin high producing strain	60.015
DRR006521	Root Winter glycyrrhizin high producing strain	32.879
DRR006522	Root Winter glycyrrhizin high producing strain	32.674
DRR006523	Root Summer glycyrrhizin low producing strain	49.426
DRR006524	Root Summer glycyrrhizin low producing strain	49.991
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.402
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.555

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.566
SRR2868004	Drought Stress (root)	33.208
SRR2967015	Control (root)	30.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.225
SRR9715740	Leaf	32.181
SRR9715741	Leaf	27.301
SRR9715739	Root	25.875
SRR9715742	Root	27.204
SRR9715743	Root	26.367

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.791
SRR8749028	MeJA induced 9h	40.672
SRR8749029	MeJA induced 9h	49.066
SRR8749030	Uninduced	21.213
SRR8749031	Uninduced	17.616
SRR8749032	Uninduced	15.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.505
SRR8400027	Control - Root	44.819