Gene detail information of Glyur000008s00001328 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05385.1 | 1.00E-48 | photosystem II 11 kDa protein-related |
| NR | XP_004496724.1 | 1.17E-118 | PREDICTED: uncharacterized protein LOC101490043 [Cicer arietinum] |
| Swissprot | tr|Q9ZVZ9|PB27B_ARATH | 9.00E-60 | Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic (Precursor) |
| trEMBL | tr|A0A072W0T5|A0A072W0T5_MEDTR | 2.00E-107 | Photosystem II Pbs27 protein {ECO:0000313|EMBL:KEH43885.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 461298 | 464083 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001328.1 | PF13326.1 | PSII_Pbs27 | 47 | 205 | 4.50E-40 |
| Glyur000008s00001328.2 | PF13326.1 | PSII_Pbs27 | 13 | 171 | 2.40E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.197 |
| SRR1783600 | control | 3.204 |
| SRR1783602 | moderate drought stress | 9.444 |
| SRR1811619 | moderate drought stress | 9.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.292 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.180 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.029 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.834 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.231 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.875 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.445 |
| SRR2868004 | Drought Stress (root) | 10.014 |
| SRR2967015 | Control (root) | 15.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.036 |
| SRR9715740 | Leaf | 38.742 |
| SRR9715741 | Leaf | 25.357 |
| SRR9715739 | Root | 0.847 |
| SRR9715742 | Root | 2.074 |
| SRR9715743 | Root | 1.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.478 |
| SRR8749028 | MeJA induced 9h | 12.232 |
| SRR8749029 | MeJA induced 9h | 8.638 |
| SRR8749030 | Uninduced | 13.758 |
| SRR8749031 | Uninduced | 9.433 |
| SRR8749032 | Uninduced | 14.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.184 |
| SRR8400027 | Control - Root | 8.691 |