Gene detail

Gene detail information of Glyur000008s00001327

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34030.1	5.00E-74	Ribosomal protein S13/S18 family
NR	XP_007225841.1	3.15E-109	hypothetical protein PRUPE_ppa011659mg [Prunus persica]
COG	YP_447903.1	4.00E-42	30S ribosomal protein S13P [Methanosphaera stadtmanae DSM 3091]
Swissprot	tr\|P34788\|RS18_ARATH	6.00E-106	40S ribosomal protein S18
trEMBL	tr\|M5Y590\|M5Y590_PRUPE	1.00E-109	Uncharacterized protein {ECO:0000313\|EMBL:EMJ27040.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	459223	462699	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

"

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001327.1	PF00416.17	Ribosomal_S13	65	193	2.10E-41

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	64.420
SRR1783600	control	64.185
SRR1783602	moderate drought stress	52.454
SRR1811619	moderate drought stress	52.090

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	89.289
DRR006520	Root Summer glycyrrhizin high producing strain	88.795
DRR006521	Root Winter glycyrrhizin high producing strain	40.556
DRR006522	Root Winter glycyrrhizin high producing strain	40.216
DRR006523	Root Summer glycyrrhizin low producing strain	72.805
DRR006524	Root Summer glycyrrhizin low producing strain	69.179
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.002
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.769

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.047
SRR2868004	Drought Stress (root)	31.407
SRR2967015	Control (root)	27.069

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.735
SRR9715740	Leaf	19.110
SRR9715741	Leaf	15.161
SRR9715739	Root	17.266
SRR9715742	Root	20.107
SRR9715743	Root	23.392

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	116.056
SRR8749028	MeJA induced 9h	39.039
SRR8749029	MeJA induced 9h	64.740
SRR8749030	Uninduced	12.651
SRR8749031	Uninduced	5.789
SRR8749032	Uninduced	8.984

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	43.307
SRR8400027	Control - Root	42.532