Gene detail information of Glyur000008s00001326 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06170.1 | 5.00E-33 | Serinc-domain containing serine and sphingolipid biosynthesis protein |
| NR | XP_004486156.1 | 3.83E-47 | PREDICTED: probable serine incorporator-like [Cicer arietinum] |
| trEMBL | tr|B7FII2|B7FII2_MEDTR | 1.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:AFK35204.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 457116 | 458657 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001326.1 | PF03348.10 | Serinc | 10 | 103 | 3.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.580 |
| SRR1783600 | control | 2.408 |
| SRR1783602 | moderate drought stress | 2.854 |
| SRR1811619 | moderate drought stress | 2.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.799 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.244 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.282 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.559 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.536 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.637 |
| SRR2868004 | Drought Stress (root) | 0.551 |
| SRR2967015 | Control (root) | 0.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.607 |
| SRR9715740 | Leaf | 0.282 |
| SRR9715741 | Leaf | 0.668 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.141 |
| SRR9715743 | Root | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.382 |
| SRR8749028 | MeJA induced 9h | 0.206 |
| SRR8749029 | MeJA induced 9h | 2.470 |
| SRR8749030 | Uninduced | 1.044 |
| SRR8749031 | Uninduced | 2.044 |
| SRR8749032 | Uninduced | 0.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.202 |
| SRR8400027 | Control - Root | 0.149 |