Gene detail

Gene detail information of Glyur000008s00001324

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G22440.1	FRIGIDA-like protein
NR	XP_003556050.1	PREDICTED: FRIGIDA-like protein 4a-like [Glycine max]
Swissprot	tr\|Q9LUV4\|FRL4A_ARATH	FRIGIDA-like protein 4a
trEMBL	tr\|I1NGF2\|I1NGF2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G28440.1}

Sequence

Transcript Sequence

>Glyur000008s00001324.1
CGTCCACGTCACCACCTTCGCTGTCTCTCCCCATTTCGCCCACCACCTTTACTCTTTCCTTCATTCACTCTCTTTTCTTCTTTCTTTCTTTCTTTCTCCTTGGTTGGTTGGTTCGTTCCTTCTCTTTTCCTTCTCTCCTCCTCTGTCTCTCTCTGATATTTTCCAACTACTAGGGTTTATCTGTTCATCTTCACCCACGATGGGGTCCATCCCCGATCCCGGCGAGTTGAGCGAGTTGGCTGAGCCAAGCTTCGACGAGTTCCAGCGCCAGACGTCACTGATGACGAGCTGCACCCTCCTCTGGAAGGAACTCTCCGACCACTTCTCTTCCCTCGAGAAGGACCTCCTCAACAAATCCGAAGCGTTGAAGCGTAAGATTCGAACCCTCGACAACCAGACCAACGAGTCACTCCACCTCCTCCACCGCCGCGAGACCTCCATCGACGGCACCATCCAGATCGCACTACGCAACCTCGATACCCGCACCCACGCCGCCCTCTCCTCCCTCACCGGAAATGAATCCGGCGACGGAGATGACGGCGAGGTCGACAATGGCGAGGGACTCGTGCTGAAGCTGAAGACGTTCTGCCTCAGGATGGACGCGCTAGGGTTTTGGGGGTTCGTGATTGGGAAGAAGAAGGAGCTTGAGGGACTTAGGTCNGAGATGCCGGTGGCGCTGTCGGAGTGCGTGGATCCGGCGAAGTTCGTGCTTGAGGCGATCTCCGAGGTGTTTCCGGTGGATAAGAGAGGGGAGAAAGGAGGGAACGACCTCGGTTGGGCCTGCGTGCTGGTTCTTGAGTCGCTGGTTCCGGTGATGGTGGACCCTGTCATCGGAAAATCGAGGATGTTGGTGACTCCCTCCGTGAAGGAGCGAGCCAGGGACATCGCTGAGACTTGGAAGGCGAGCCTGGAAGAGCGCGGTGGGGTCGAGAATGTGAAGACCCCTGATGTTCACACCTTCTTGCAGCACCTTGTCACCTTTGGGATTGTTGACAGCGATGATTTGCAACTGTATCGCAAGCTTGTTATTGCCTCTGCTTGGAGGAAACACATGCCTAAGCTTGCCCTTTCCCTTGGCCTTGCTAATCAAATGCCTGATATGATTGAAGAGTTGATCAGCAAAGGCCAGCAGCTTGATGCTGTTCATTTCACATTTGAAGTGGGTCTTGTCGACAAGTTCCCCCCTGTTCCACTCCTCAAATCCTTCTTGAAGGATGCAAAGAAAGTTGCCGCCTCTATATTGGAAGATCCCAATAATGCAGGACGAGCTGCGTACCTAGCTGCTAGAAAAGAGCAGTCTGCTCTCAGGGCTGTGATTAAATGCATTGAGGAGTACAAACTCGAAGCTGAGTTCCCTCCTGAGAATCTGAAGAAGCGACTTGATCAATTGGAGAAGGTCAAGATAGAGAAAAGGAAACCAGCTGCTGTCCCTGCCAACAAAAGAACACGAGCAAGCAACAGCAATGGAGGCCCAATGCCACCAGCCAAGGCTGGCCGTTTGACGAATGCATATGTGTCATCTTTCCCTGCTGCTCCCACATTTGTCAGATCTCCATCACACGGGCAATACCCAGCTGCTCTTCCACCCTATCCTTCCCCACCCCACATGTATGGCAGCAGAAGTCCCCCAACAAATCCCTATGCCTATTCACCAGAGCCAGCACCGGCCATTGCAGGGTCGTACCCAGCGGCCCCCATGAACTATCCTGCGTACGGTGGCTATGGAAATGTTTTGGCACCCACTTATCAGCAGGCTTACTACCGATAGAAATGACAACCCTTGAAAGATGGTAACCACTGATATGACGACCTTGATCCCATTTACTTTCGCAATGTTGTTTGTAATCACTAACCGTTTAACGGTAGCAGTTCTGTGTGTTAATTATAACTACTGTCCCACTCCCTGCACTGCATGGGGAGAAGTTGTATTTCTAATGTTGATCCCATAGTACTAGCTGATTGTGGAAAGTAACTAGGACGGCCAAGAAACATCAGAAACTCTACTACCACTGTTCGGTTTAGTTGTAGACAGACTTACTTCTTTTACTGTGTTTACATTATATGCTTATCCTGGGATCAAACTGAAGGGAAAAAGAAAAAGGTAATATGTTTCTTGGCAGCTGTTGACTATGGTATAAACTCTATATAAAGGAAATAATCTTGTCTGTGATGAATGTATTTTACTTTGACGACTGGTTTTATATTCACAATCCCATAGGGTTAGTTATTTGTTGTTACATGCTCCTCTTTGTGGCATTCTTCCAAGTGAAAGATTATGTGGGAAAAGAATATGCGTAAACCAGGTCAAGGGTATTGCCAGCTAAATCCAGTTTGTGGTTTTAGAAAAAATGATGGAATGGGATCACAGTAATTTGTCCCTAGAAAAAAAGTATTTACGGTACTTGGCAAACTGAGCCTACAACCCACTCAAGGGAGCAAGGAACAACGCAGACCATAGGGAGGNAAACCACGATGGGGGCAGGGTATCTTTTCTAACATGTGAGCTAATGAACATCTGTGTTTCAACTTATCANTCTTCGTATTCTATGACTATAAACATCCTTCTCATGGTTGTGATATTAAGCATTGTATATCATGATGATGCATGATTNTTGAGCTTGTCCGCGCTAGGAAGGGATGTGGCTGTTTCTGGAGCAAATTCTTTAGGTCAGGGAATGATTTTTATAACTCAGGATTCTCAAGAAGAAAAAAGACAAGGAAAATGCCAAGGAGGTGAAGATANCTAAAACAAGTCCACATATGACTTCCAAAGGCGAAGTTTCCCACACTTNATGGAATGTGTCACAGTTCATGCTTGTTTTGTTCATAGGGATGGAAAATAGTAAGCTTGTTTTCCATGTCTCAGAATATGAGGTTTGACGTAGCTTCTAAGGTTGTTGGTGTAGGGGCAATTCTGCTCAGAGAGCATTAGCTGATGATATTTCNTGTCGTAATTGACAATACAAGGAAAGGAGCTGAAGCTTCAAAAGTCAGACCCTTTTTCAATACATCATTTGGTAATGGCGTTAATGCGAAAATGTCCATCTAGAGATTAAGCAAAGAAGCCTCAAGAAGGCAATTCAGCCACATTTGAGCCAGGGGTTCATGCTTTTTCAGTTGGCGGTGTCTGTTGTAATGTGTGATGGATAAATTGGCTATTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	434366	438217	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001324.1	PF07899.6	Frigida	120	409	1.40E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	301.119
SRR1783600	control	302.305
SRR1783602	moderate drought stress	709.965
SRR1811619	moderate drought stress	707.320

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	318.460
DRR006520	Root Summer glycyrrhizin high producing strain	314.390
DRR006521	Root Winter glycyrrhizin high producing strain	564.697
DRR006522	Root Winter glycyrrhizin high producing strain	550.846
DRR006523	Root Summer glycyrrhizin low producing strain	356.132
DRR006524	Root Summer glycyrrhizin low producing strain	353.188
DRR006525	Leaf Summer glycyrrhizin high producing strain	85.240
DRR006526	Leaf Summer glycyrrhizin high producing strain	84.393

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	166.446
SRR2868004	Drought Stress (root)	227.501
SRR2967015	Control (root)	269.981

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	123.981
SRR9715740	Leaf	116.649
SRR9715741	Leaf	178.600
SRR9715739	Root	370.926
SRR9715742	Root	393.551
SRR9715743	Root	370.574

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	299.001
SRR8749028	MeJA induced 9h	239.436
SRR8749029	MeJA induced 9h	250.835
SRR8749030	Uninduced	255.673
SRR8749031	Uninduced	266.344
SRR8749032	Uninduced	288.776

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	212.271
SRR8400027	Control - Root	201.362