Gene detail information of Glyur000008s00001323 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14880.4 | 3.00E-130 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 |
| NR | XP_004496722.1 | 0 | PREDICTED: cysteine synthase-like [Cicer arietinum] |
| COG | YP_591171.1 | 1.00E-128 | cysteine synthase [Candidatus Koribacter versatilis Ellin345] |
| Swissprot | tr|Q43317|CYSK_CITLA | 0 | Cysteine synthase |
| trEMBL | tr|A0A072W0S8|A0A072W0S8_MEDTR | 0 | Cysteine synthase {ECO:0000256|RuleBase:RU003985} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 424845 | 428605 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01738 | cysK | EC:2.5.1.47 | Carbon metabolism | map01200 |
| Biosynthesis of amino acids | map01230 | |||
| Sulfur metabolism | map00920 | |||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001323.1 | PF00291.20 | PALP | 13 | 299 | 3.30E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.021 |
| SRR1783600 | control | 0.021 |
| SRR1783602 | moderate drought stress | 0.022 |
| SRR1811619 | moderate drought stress | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.253 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.179 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.063 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.774 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.395 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.048 |
| SRR2868004 | Drought Stress (root) | 0.108 |
| SRR2967015 | Control (root) | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 77.351 |
| SRR9715740 | Leaf | 125.526 |
| SRR9715741 | Leaf | 211.901 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.245 |
| SRR9715743 | Root | 0.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.006 |
| SRR8749028 | MeJA induced 9h | 0.039 |
| SRR8749029 | MeJA induced 9h | 0.035 |
| SRR8749030 | Uninduced | 0.256 |
| SRR8749031 | Uninduced | 0.030 |
| SRR8749032 | Uninduced | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.012 |
| SRR8400027 | Control - Root | 0.163 |