Gene detail

Gene detail information of Glyur000008s00001320

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45550.1	2.00E-123	cytochrome P450, family 76, subfamily C, polypeptide 4
NR	XP_004496721.1	0	PREDICTED: geraniol 8-hydroxylase-like [Cicer arietinum]
COG	YP_004643624.1	4.00E-41	cytochrome P450 hydroxylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	0	Geraniol 8-hydroxylase
trEMBL	tr\|A0A072VR50\|A0A072VR50_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:KEH43873.1}

Sequence

Transcript Sequence

>Glyur000008s00001320.1
ATGGACTTTGTAATTTGTACTCTTCTCCTTCTGTTAACAACATGTGCCACCATTCATGTTTTTCTTCGTTTACTCGCAAGAAAACCAAACCACAACCTTCCACCAGGACCATCCCCTCGTCCCATCATAGGGAACCTCTTTGAGTTAGGGGAAAAGCCCCACAAGTCATTGTCAAAACTTGCCAAAATCCATGGCCCTGTAATGAGCCTAAAGCTAGGCCAAATAACCACAGTTGTGATTTCCTCAGCAGAAATGGCCAAAGAGGTTCTCCTAACCAATGACCAGTTCTTGTCAAACCGAACCATTCCCCAATCCGTATCAGTTCTCAACCACGAACACTATAGCCTCGCCTTCATACCGGTCTCACCGCTTTGGAAGGAAATCAGAAAGATATGCAACACTCAGTTATTTTCCCACAAGACTCTTGATGCCAGCCAAGACGTGAGGCGCAAGAAAGTGCAACAGCTCCTCGGCGATATCCACCGAAGCAGCCAAATCGGCGAAGCCGTGGATATCGGAACGGCAGTGTTCAAGACCACCATAAATCTGTTATCGANCACCATTTTCTCTGTGGATTTGATTCAGTCCACAGGTGCAGCAGGGGAGTTCAAGGACATGGTGACAGATATCACTAAACTCGTTGGAACACCAAACTTGGCTGATTATTTCCCCATATTGAAGATGGTTGACCCACAAGGAGTAAAAAGAAGACAAGCAAAGAATGTAAAAAAGGTACTAGACATCTTTGATGGCTTGATCAAGCAACGGTTGAAGATGAGAGAAAGTACTAGTTTTGAAAGCCACAACAATGACATGTTAGATGCCCTTCTCAACATTTCAAAGGAGANCGAGTTCATAGACAAAAACATGATTGANCATCTGTCCCATGATCTATTCGTAGCAGGAACTGACACAACAACATCTACATTAGAATGGGCAATGACTGAGCTACTTTGCAACCCAGAAGTAATGTCAAAAGCCAATAAAGAGCTTGATCAAATCATTGGGAAAGGTAAACCCATTGAGGAATCAGATATCTCTAAGCTCCCATACTTAGAAGCCATAATAAAAGAGACATTAAGGTTGCACCCACCAGTCCCATTTTTACTGCCACGGAAAGCTGAGAGGGATGTTGACATAGGCGGCTACACTATCCCAAAGGATGCACAAGTGTGGGTTAATGTGTGGACTATTTGTAGAGATCCAACCTTGTGGGAGAACCCAACTTTGTTTTCACCAGAGAGGTTCATGGGGTCAGATATTGATGTTAAAGGAAGGAGCTTTGAGCTTGCACCATTTGGTGCTGGGAGGCGAATTTGCCCTGGCTTGCAATTGGCCAATAGGATGTTGTTGTTAATGTTGGGTTCATTGATCAACTCATTTGATTGGAAGCTTGAAGATGGCATGAAACCAGAAGACATGGACATGGATGATAAATTCGGTATTACCTTGCAAAAGGCTCAACCACTTCGTGTTATCTTCCAGTCAAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	423084	424675	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001320.1	PF00067.17	p450	34	483	1.80E-109

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.072
DRR006520	Root Summer glycyrrhizin high producing strain	0.071
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.148
DRR006524	Root Summer glycyrrhizin low producing strain	0.148
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.451
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.763
SRR2868004	Drought Stress (root)	3.263
SRR2967015	Control (root)	3.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.437
SRR9715740	Leaf	0.480
SRR9715741	Leaf	0.810
SRR9715739	Root	0.197
SRR9715742	Root	1.041
SRR9715743	Root	1.196

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.895
SRR8749028	MeJA induced 9h	2.327
SRR8749029	MeJA induced 9h	2.635
SRR8749030	Uninduced	63.537
SRR8749031	Uninduced	15.653
SRR8749032	Uninduced	8.285

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.098
SRR8400027	Control - Root	0.394