Gene detail information of Glyur000008s00001309 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05440.1 | 8.00E-63 | C-8 sterol isomerases |
| NR | XP_004496715.1 | 1.09E-164 | PREDICTED: uncharacterized protein LOC101514350 [Cicer arietinum] |
| trEMBL | tr|I1NGG2|I1NGG2_SOYBN | 3.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G28530.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 372136 | 373423 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001309.1 | PF04622.7 | ERG2_Sigma1R | 173 | 301 | 3.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.886 |
| SRR1783600 | control | 0.909 |
| SRR1783602 | moderate drought stress | 0.773 |
| SRR1811619 | moderate drought stress | 0.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.798 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.705 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.832 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.692 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.343 |
| SRR2868004 | Drought Stress (root) | 2.871 |
| SRR2967015 | Control (root) | 2.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.139 |
| SRR9715740 | Leaf | 0.034 |
| SRR9715741 | Leaf | 0.257 |
| SRR9715739 | Root | 0.890 |
| SRR9715742 | Root | 0.308 |
| SRR9715743 | Root | 0.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.819 |
| SRR8749028 | MeJA induced 9h | 2.185 |
| SRR8749029 | MeJA induced 9h | 0.874 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.666 |
| SRR8400027 | Control - Root | 1.997 |