Gene detail information of Glyur000008s00001308 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22540.1 | 8.00E-37 | Protein of unknown function (DUF1677) |
| NR | XP_002282737.1 | 8.77E-67 | PREDICTED: uncharacterized protein LOC100251046 [Vitis vinifera] |
| trEMBL | tr|V7BBM9|V7BBM9_PHAVU | 9.00E-65 | Uncharacterized protein {ECO:0000313|EMBL:ESW15262.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 367186 | 367560 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001308.1 | PF07911.8 | DUF1677 | 2 | 88 | 1.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.718 |
| SRR1783600 | control | 7.524 |
| SRR1783602 | moderate drought stress | 7.384 |
| SRR1811619 | moderate drought stress | 7.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.044 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.431 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.263 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.675 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.295 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.718 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.041 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.891 |
| SRR2868004 | Drought Stress (root) | 31.902 |
| SRR2967015 | Control (root) | 51.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.112 |
| SRR9715740 | Leaf | 0.412 |
| SRR9715741 | Leaf | 0.497 |
| SRR9715739 | Root | 23.637 |
| SRR9715742 | Root | 12.798 |
| SRR9715743 | Root | 13.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 41.331 |
| SRR8749028 | MeJA induced 9h | 30.134 |
| SRR8749029 | MeJA induced 9h | 35.686 |
| SRR8749030 | Uninduced | 4.815 |
| SRR8749031 | Uninduced | 4.598 |
| SRR8749032 | Uninduced | 4.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.019 |
| SRR8400027 | Control - Root | 55.628 |