Gene detail information of Glyur000008s00001302 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22600.1 | 4.00E-31 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
| NR | AFK43474.1 | 4.99E-87 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9LZH5|LTPG2_ARATH | 1.00E-16 | Non-specific lipid transfer protein GPI-anchored 2 (Precursor) |
| trEMBL | tr|I3ST82|I3ST82_LOTJA | 2.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:AFK43474.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 331421 | 332420 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001302.1 | PF14368.1 | LTP_2 | 10 | 105 | 1.20E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.724 |
| SRR1783600 | control | 23.425 |
| SRR1783602 | moderate drought stress | 19.482 |
| SRR1811619 | moderate drought stress | 19.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.428 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.426 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.907 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.126 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.020 |
| SRR2868004 | Drought Stress (root) | 22.974 |
| SRR2967015 | Control (root) | 26.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.555 |
| SRR9715740 | Leaf | 1.410 |
| SRR9715741 | Leaf | 2.593 |
| SRR9715739 | Root | 50.357 |
| SRR9715742 | Root | 13.812 |
| SRR9715743 | Root | 17.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.133 |
| SRR8749029 | MeJA induced 9h | 0.023 |
| SRR8749030 | Uninduced | 7.344 |
| SRR8749031 | Uninduced | 17.266 |
| SRR8749032 | Uninduced | 2.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 122.349 |
| SRR8400027 | Control - Root | 137.668 |