Gene detail

Gene detail information of Glyur000008s00001293.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22740.1	1.00E-99	homocysteine S-methyltransferase 3
NR	XP_007143295.1	1.53E-178	hypothetical protein PHAVU_007G0603001g, partial [Phaseolus vulgaris]
COG	YP_004846788.1	9.00E-76	homocysteine S-methyltransferase [Pseudogulbenkiania sp. NH8B]
Swissprot	tr\|Q8LAX0\|HMT3_ARATH	6.00E-134	Homocysteine S-methyltransferase 3
trEMBL	tr\|V7BBU1\|V7BBU1_PHAVU	6.00E-179	Uncharacterized protein {ECO:0000313\|EMBL:ESW15289.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000008s00001293.1
ATGTATTATTTTGAGGAACAAGTTCACCTAGATTACCTTGACGCAGGAGCAAACATAATATTAACATCATCTTATCAGGCAATTAATTATTTTCTCTTTCTACAATATTTTGGCTCATTTTATGGGGCTGGGATTCAGGCCACTATTCAGGGTTTTGAAGCTAAAGGGTTCTCCAGGGAAGAAGGTGAAGCTCTGCTTAGAAGAAGCGTGGAGCTTGCACGTGAGGCTCGAGAAATCTATTGTGATAGGTGTACTAAAGATTCTTCAGACTTCCTCAGAGATGAAAGATACAGAAGACGTCCCATTCTAATTGCAGGTTCTGTGGGAAGCTATGGGGCGTATTTAGCTGATGGCTCTGAATATAAAGGGGACTATGGTGATGCAGTCACTGTCCAGACACTCAAAGATTTTCACAGGGAAAGGGTAAAGATTCTTGTCGACGCAGGTGCTGACTTAATTGCCTTTGAAACAATTCCAAACAAGCTGGAGGCAAAGGCTTATGCTGAACTTCTCGAGGAAGAAGGCATGGAGATTCCTGCGTGGTTTTCTTTTAGTTGCAAGGATGAGAGCAATGTGGCTAGTGGTGATTCTATCTTAGAGTGTGCTTCAATAGCTGATTCGTGTGGACAAGTTGTTGCGGTTGGAGTCAACTGCACTGCTCCTAGATTTATTCATGGGTTGATTTCATCTATTAAAAAGGCAACAAGTAAACCACTACTTGTATATCCCAACAGTGGAGAGACTTATATCGCTGAGAACAACCAATGGGTGAAATCAAGTGGGGAAGCGGAGAAAGATTTTGTTCCATACATAGGCAAGTGGCGTTATGCTGGGGCTTCCCTTTTTGGTGGCTGCTGCAGGACTACTCCCAATACTATTAGAGGCATAGCTGAGGCAATATACGGAAAACCTGAAGGGCAAGGCAAATGTATATAATTGTGGAACTATGTTCTGTCTGTAATGGAACAAATGACAATAATGTGAAGGAAATGTTTAGCTTTCTGCCTTTACTGTTCCACTTATTTGACATGCATTCACTTTTCGGCCTAACTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	272632	274743	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00547	mmuM, BHMT2	EC:2.1.1.10	Cysteine and methionine metabolism	map00270

Gene Ontology

molecular_function
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001293.1	PF02574.11	S-methyl_trans	6	300	2.20E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.055
SRR1783600	control	8.090
SRR1783602	moderate drought stress	12.489
SRR1811619	moderate drought stress	12.326

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.718
DRR006520	Root Summer glycyrrhizin high producing strain	5.668
DRR006521	Root Winter glycyrrhizin high producing strain	14.438
DRR006522	Root Winter glycyrrhizin high producing strain	14.466
DRR006523	Root Summer glycyrrhizin low producing strain	11.112
DRR006524	Root Summer glycyrrhizin low producing strain	11.364
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.054
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.955

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.512
SRR2868004	Drought Stress (root)	18.489
SRR2967015	Control (root)	9.126

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.404
SRR9715740	Leaf	7.147
SRR9715741	Leaf	4.873
SRR9715739	Root	17.582
SRR9715742	Root	57.569
SRR9715743	Root	50.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.789
SRR8749028	MeJA induced 9h	10.184
SRR8749029	MeJA induced 9h	3.573
SRR8749030	Uninduced	2.488
SRR8749031	Uninduced	0.614
SRR8749032	Uninduced	1.880

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.454
SRR8400027	Control - Root	9.094