Gene detail

Gene detail information of Glyur000008s00001290.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22750.1	2.00E-163	Protein kinase superfamily protein
NR	XP_004496695.1	0	PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Cicer arietinum]
COG	YP_001958461.1	4.00E-30	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	8.00E-66	Serine/threonine-protein kinase HT1
trEMBL	tr\|I1JAR3\|I1JAR3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G44650.1}

Sequence

Transcript Sequence

>Glyur000008s00001290.1
ATGCATTCGGAAGGTGGGGCTCTTAGTACCCCGAAGATGGGATCGGAAGATGGAGCTTTGAATTCAAAGATGAAGGGTAATGGAAATCTAAGCAGCAAAGATATGATTTTCAGGGCTGATAAAATTGATCTGAAGAATTTGGATGCCAAGTTAGAAAAGCACTTGAGCAGGGTTTTTTCCAGAAACATTGAGGCAAATAGGCGAAGAGAAGAATGGGAGATTGATTTGGCCAAGTTGGATTTACGATATGTTGTTGCTAGTGGGGCCTATGGTACTGTTTACAGAGGCACTTATGACGACCAAGATGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTCGCCACTGCTGCTGAAACTGCTGCTTTACGAGCATCATTTCGGCAGGAGGTTACTGTGTGGCACAAACTTGATCATCCAAATGTCACAAAATTTTGTAATTGTTCGTATCGTTCCTCCAAACAGTTTATTGGAGCTTCAATGGGCACTTCAAATCTTAAGCTTCCTGTACAAGCTGGTGGTCAAGATTCCCTTCCTTCCAAGGCGTGTTGTGTTATTGTTGAGTTTCTCCATGGTGGGACACTAAAACAATACTTGTTGAAGAATAGGCGAAAGAAACTTGCATACAAGGTTGTGATTCAGCTGGCTTTGGACATCGCTAGAGGTCTTAGTTATCTACATTCAAGGAAAATTGTTCACCGCGATGTAAAAACTGAAAACATGTTGTTAGATGATAATCATAATTTGAAACTAGCTGATTTTGGAGTTGCTCGGATTGAAGCTGCAAATCCGAGTGAAATGACGGGTGAAACTGGAACCGTTGGGTATATGGCACCGGAGGTTCTAAATGGTAAGCCTTACAACAGAAGCTGTGATGTCTACAGCTTTGGCATTTGCTTGTGGGAACTTTATTGCTGTGACATGCCTTATCCAAATCTAAGCTTTGTTGACGTGTCATCGGCCGTTGCTCATCAGAATTTACGACCAGATATTCCTAGATGTTGTCCAAATTCATTAGCAAATGTCATGAGGAAATGCTGGGACAAAAATCCAGAAAAGCGTCCAGAAATGCATGAGGTGGTGAGAATGTTGGAAGCAATTGATACGAGCAAAGGAGGTGGAATGATACCCGAGGATCAGACTCCATTTTGTTTCTGTTTTATACCTGCTCGTGGTCCATAACTCTTCATATTCAACTCTTCATGAGTACTATTATGTACATGGCTGGGTAGGTAAATTGTGTATACAGAAATCTAGGATATATATGTTGCAGCTTGCAATTGTCATTTTTTGCCTTGCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	257130	260095	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001290.1	PF07714.12	Pkinase_Tyr	82	365	2.80E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.967
SRR1783600	control	1.090
SRR1783602	moderate drought stress	1.856
SRR1811619	moderate drought stress	1.932

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.993
DRR006520	Root Summer glycyrrhizin high producing strain	1.975
DRR006521	Root Winter glycyrrhizin high producing strain	1.747
DRR006522	Root Winter glycyrrhizin high producing strain	1.475
DRR006523	Root Summer glycyrrhizin low producing strain	0.930
DRR006524	Root Summer glycyrrhizin low producing strain	0.925
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.231
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.167
SRR2868004	Drought Stress (root)	11.322
SRR2967015	Control (root)	10.817

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.649
SRR9715740	Leaf	12.765
SRR9715741	Leaf	10.104
SRR9715739	Root	2.157
SRR9715742	Root	4.631
SRR9715743	Root	4.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.419
SRR8749028	MeJA induced 9h	10.600
SRR8749029	MeJA induced 9h	3.957
SRR8749030	Uninduced	3.571
SRR8749031	Uninduced	5.941
SRR8749032	Uninduced	4.581

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.282
SRR8400027	Control - Root	4.683