Gene detail

Gene detail information of Glyur000008s00001289

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14770.1	2.00E-112	TESMIN/TSO1-like CXC 2
NR	XP_007143298.1	0	hypothetical protein PHAVU_007G060500g [Phaseolus vulgaris]
Swissprot	tr\|F4JIF5\|TCX2_ARATH	9.00E-146	Protein tesmin/TSO1-like CXC 2
trEMBL	tr\|V7BBQ7\|V7BBQ7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15292.1}

Sequence

Transcript Sequence

>Glyur000008s00001289.1
AACAGAAGTAGTAACTGAAAACAGATAAAATCCCTTATTTTCAGATAAAGAGATAGAGAGGGAAAAGGCGTTGCTACCTTAAATGCTGCTAGTGCCCATGTAAATGTTTCCCTATCTCGCTCTCNGGAGATGAACACACCAGAGAGGAACAACATCAACAACACCCCTCTTTCCGAATTTGAGATGCAGGATTCATCTGTATTTAACTATCTCAATAGTCTATCTCCTATAAAGCCCGTAAAGTCTGTTCACATTGCTCAGACGTTGAACTCACTTAGCCTTTCATCCCCTCCATCAGTTTTCACTTCCCCCCATGTCAACTGTCACAAGGAATCCAGATTCCTCAGGTGGCATGGCCTTTTGGACTCATCAAAGCCTAAAGTTTCGTTGGAAGATGTAAATAAGATATATTCACGAGAAGAGGCTCCTACTGATTCTACTCATGCATGTCGTGACTCAAGTGAGCTGCAGGAAAATACAGATCAAAGGATTTCCATGGGAGATTCCTTAATTGATTTTGATCCATCTAGGGAATGTACAAAGTTTGAGCTTCCACAAGCCTTAAAATATGATTCTGGTAGCCCTGGATGTGTTCCTCTACTTTGCAGTGTTGAGACTAACTCTCTTTTGGAATTGCCTAGAGAGCCAGCATCAGATGTTGCCTTTGTACAGCAAGTCTCTAAAAGAGACTCAGTTGAGGGAGTATCTCAGATTGAGGCAAACATTGAAGGCCCAGATTGTGATTGGGATAATTTAATTATTGATAGCTCTGATATGTTATTTTTTAGTTCCCCAACTGTGACAGGAGCTTTTAAGGGCCTAATGAATAAACCATTGGATCTTTCGACACGGTTTAGCAAGTTTATGACTCTGTTACCACAATCTACCACTAATAATGGTCATAAAATGCACATTGCTAATCCAGTTGCTTCTGGGTCAGAACATGAAATTGAAGATAATCTTTCTGAACTAATATCAGCCACAGACACATGTCAGACACAGGAAAATCTTGCCAATGTTGCTTTGATGGCTAGCAATCCAAGTGAGGAAATTGATGATGAGCTTGTTCAAGTGACACACCATCGCATACGGAGGCGCTGTCTAGANTTTGAGGTGGCCAGTGTGCAAAGGAATAACTCAGGTGATAATTCAAANATCAGTTCCAGTACAGCTAAGTCTGATGAGAGGAATGTTGGTAAAGAAAAGCCACCACTCCCTGGGAAACGCACTCGTGATTCATGGAGGCGTGCTTTGCCGGGAATTGGTTTGCACTTGAATGCACTTGGAACCTTAAAAGGTTACACAAGCATAAAAAATGAACCGATGTCTCCAGGAAGGATAATTAAACTGCCCAGCTGCATTTCTTCCTTCAATCTCTCTGCAAGCCAAGAGCATCATCAATCCCTGNTACCTGCATCATTGGAAAGAGATTTGGAGCCATCCGAGAATGAAGTTCAGCCTTCTGAAGATTGCGCCCAATTATCAGTTTACAAGGCTGGTGAAGATTCCCATCAGAATAGCCCCAAAAAGAAAAGGCACAAGTTGGAACCAGCTGGGGAAGGGGAGGGCTGCAAGCGGTGTAATTGTAAGAAATCGAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAACCTTGCTCATGTCAGGGCTGCTTCAACAAGCCTATTCATGAAGATACTGTTCTTCAAACTCGCAAGCAGATTGAGTCTCGTAATCCACTTGCGTTTGCTCCTAAAGTCATAAGAAGTTCTGATTCCGCACCTGAACTTGGGAATGACCCTAATAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGTAGATGTGAAGGGTGCAAGAATGCATATGGCAGAAAGGATGGTTCTGCCCCTGTCGAAATGAAAGCCAAGCCTGAAGAAGTAACAGAAGCATGTGAAGAGGGTGGGGTGGAAAAAGCTTCACCGAAAACCGAAATTCAGAATATGGAAGACCATCCAGATGGTGCTCTTCCCACAACACCATTACGGCTCTCAAGGCCATTGCTTCAGTTACCCTTTTCAACAAAGGGAAGATCTTTTGTTACCACCATCTCTGGGAAACCAAATGCTCTTCAGTCTCAATCTAGATTTGAAAAGCCTTTTCTGCAAGCTGTTCGAGATGAGGATGATGATTCTGCTGTAACTTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATATCCTCTTCTCACTTTGGAGCATCTCCTACTCGCAAAGGTGGCAGGAAGTTGATATTACAATCCATCCCTTCATTTCCTTCTCTCACCCCTCAAAATGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	244400	249060	-

Gene family

Gene family	subfamily
Transcription Factors Family	CPP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001289.1	PF03638.10	TCR	481	518	1.10E-13
Glyur000008s00001289.1	PF03638.10	TCR	565	603	2.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.443
SRR1783600	control	1.356
SRR1783602	moderate drought stress	1.175
SRR1811619	moderate drought stress	1.233

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.161
DRR006520	Root Summer glycyrrhizin high producing strain	1.239
DRR006521	Root Winter glycyrrhizin high producing strain	0.419
DRR006522	Root Winter glycyrrhizin high producing strain	0.409
DRR006523	Root Summer glycyrrhizin low producing strain	0.276
DRR006524	Root Summer glycyrrhizin low producing strain	0.277
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.170
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.656
SRR2868004	Drought Stress (root)	1.533
SRR2967015	Control (root)	1.890

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.855
SRR9715740	Leaf	1.570
SRR9715741	Leaf	1.884
SRR9715739	Root	1.041
SRR9715742	Root	0.912
SRR9715743	Root	0.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.232
SRR8749028	MeJA induced 9h	0.308
SRR8749029	MeJA induced 9h	0.025
SRR8749030	Uninduced	0.181
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.117

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.465
SRR8400027	Control - Root	2.138