Gene detail

Gene detail information of Glyur000008s00001285

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34670.1	2.00E-116	Ribosomal protein S3Ae
NR	XP_004496691.1	6.89E-176	PREDICTED: 40S ribosomal protein S3a-like [Cicer arietinum]
COG	YP_002429028.1	2.00E-24	30S ribosomal protein S3Ae [Desulfurococcus kamchatkensis 1221n]
Swissprot	tr\|Q8GTE3\|RS3A_CICAR	9.00E-176	40S ribosomal protein S3a {ECO:0000255\|HAMAP-Rule:MF_03122}
trEMBL	tr\|C6TLV6\|C6TLV6_SOYBN	6.00E-176	40S ribosomal protein S3a {ECO:0000256\|HAMAP-Rule:MF_03122}

Sequence

Transcript Sequence

>Glyur000008s00001285.1
GTGTGAGTGAGAGTTAAGAGTGGGGTGTATCAGCTTTGGGAGGGAAATGGAATTAAGAAAGGATGAGGGTAGGATAGTAAATTTTAGTCCAAAAAAGTTAANGTGGGNTGGATGGATAGAAGGTTGGGGTGTATATACCAATTCCCAAAAACAAATTGAAGATAATACGAGAGTCAAAAGCGTTGGGGTATATTAATAAGAGGTTAGGGGCTAGGGTTTTGCGTGCCATTGTTGCTGTTTGTCTCGGCTGTCATCTGTAGCCGGGTGTTATCTGCAAACAGTGAACCATGGCCGTTGGTAAGAACAAGCGAATCTCCAAGGGGAAGAAGGGTGGCAAGAAGAAGGCAGCTGATCCCTTTGCCAAGAAGGATTGGTACGACATCAAGGCTCCCTCTGTGTTCCAGGTCAAAAATGTTGGCAAAACCCTTGTAACTCGTACTCAGGGTACCAAGATTGCTTCAGAAGGGCTCAAACATAGAGTTTTTGAGACCTCATTGGCTGACCTTCAAGGGGATGAGGAACATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGACATTCAAGGGAGGAATGTTCTGACAAATTTCTGGGGAATGGACTTCACAACTGACAAGATGAGGTCAATGGTGCGAAAGTGGCAAACTCTTATTGAAGCCCATGTGGATGTGAAGACAACTGATAATTACACATTGAGGATGTTCTGCATTGGATTTACCAAGAGGAGAAGTAACCAGGTGAAGAGGACCTGTTATGCACAATCAAGCCAGATTAGACAGATCCGTAGGAAGATGAGGGAGATCATGACCAACCAGGCAACATCCTGTGATTTGAAGGAGTTGGTCCGCAAGTTCATTCCTGAAATGATTGGAAAAGAGATTGAGAAGGCAACTTCTAGTATTTACCCTCTACAGAATGTCTTCGTTAGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCATGGCGATTACTCGGAAGACATTGGTACTAAGGTAGACAGACCTGCTGATGAACCAATGGCAGAGGGAACCACTGAAGTTGTTGGAGCTTGATTTAATGATAATGCTTTTCTGATAATGCTTTTCTAGGTTGTTTTAGATTTTCTGCTACTTGTGTTTTTACCGAAAATTAAGTTTATAGACTTCAGTCCAATGTTTCTGTGTAAGCTGAGTGAACTAGTTTCGTTTTTCACATTCAGAAAATATTTTTTTGGCCCTCAATTTATATCTGGATATTGTTNAGACCCCTGATGATCAGATCTTCATGCTTATAACAACTGGTATGTTATTAGGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	224951	227674	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001285.1	PF01015.13	Ribosomal_S3Ae	12	222	5.60E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.718
SRR1783600	control	40.691
SRR1783602	moderate drought stress	45.001
SRR1811619	moderate drought stress	44.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	77.843
DRR006520	Root Summer glycyrrhizin high producing strain	77.486
DRR006521	Root Winter glycyrrhizin high producing strain	39.668
DRR006522	Root Winter glycyrrhizin high producing strain	38.613
DRR006523	Root Summer glycyrrhizin low producing strain	79.780
DRR006524	Root Summer glycyrrhizin low producing strain	80.001
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.369
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.272

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	214.597
SRR2868004	Drought Stress (root)	135.595
SRR2967015	Control (root)	137.508

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	78.943
SRR9715740	Leaf	87.221
SRR9715741	Leaf	70.234
SRR9715739	Root	37.510
SRR9715742	Root	69.631
SRR9715743	Root	59.209

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	382.619
SRR8749028	MeJA induced 9h	161.851
SRR8749029	MeJA induced 9h	279.753
SRR8749030	Uninduced	62.192
SRR8749031	Uninduced	45.984
SRR8749032	Uninduced	71.455

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	143.242
SRR8400027	Control - Root	117.050