Gene detail

Gene detail information of Glyur000008s00001284

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22800.1	9.00E-130	Leucine-rich repeat (LRR) family protein
NR	XP_004496690.1	0	PREDICTED: leucine-rich repeat extensin-like protein 6-like [Cicer arietinum]
COG	YP_004775215.1	3.00E-29	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LUI1\|LRX6_ARATH	4.00E-158	Leucine-rich repeat extensin-like protein 6 (Precursor)
trEMBL	tr\|V7BCK0\|V7BCK0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW15295.1}

Sequence

Transcript Sequence

>Glyur000008s00001284.1
ATGGCCTCCTCTCATAATTCCCCAAAATCAGAAGGCCCTGCTTACACTAGTCTTATAACTATACCATTCCTTGTCCTTCTCTTCATCAATATCAATCCCTCACACCAAACAGAACAACACCCTTCCCCTCTGCCCCAACTAAACCCAAGGCTCTCTAAAGCCTACACAGCCCTCCAAGCATGGAAGCACACAATCACCTCAGACCCAAAGAACTTCACCTCCGACTGGTGTGGCCCCAACGTCTGCAACTACACCGGCATCTACTGTGCACCAGCCCCAGACGATCCTCACACCTACACAGTCGCAGGAATAGACCTAAACCATGCCAACATAGCCGGTTCATTGCCAGAGGAACTTGGCCTTTTAACCGACCTATCCCTTTTCCACATAAACTCCAACCGCTTCTGCGGTTCCCTACCAAACAGCTTCAACCACCTTAACCTCCTCCACGAACTAGACATCAGCAACAACCAATTCTCAGGAACATTCCCCGAGGTTGTCCTCTGCCTCTCTTCACTTAAATACTTGGACATAAGATACAATGGGTTCCAAGGCAATGTTCCCACGCGCCTTTTTGATCTCAAACTCGATGCACTATTTATCAACAACAACAAATTCCAATTCTCTTTGCCTGAAAACTTGGGGAATTTTCCAGCTTCTGTGATTGTGTTTGCGAACAATGACCTCAAGGGTTGTCTTCCATCGAGTGTTGCCAAAATGAAGGATACCCTTAACGAGATTATCATCACGAATATTACGGTTTTTGATGTGAGTTTCAATAAGGTGGTTGGTGAATTGCCTGAGTCAATTGGAGGGATGAAGAGCTTGGAGCAGTTGAACGTGGCGCATAATAAGCTTTCTGGGACTATTCCAGAGAGTATATGTAGGTTGCCAAGGTTGGAGAACTTCACGTATTCTTACAACTACTTCTGTGGGGAATCACCGGCGTGTCTGAAATTGCCTGATAAGGATGATAGGAAGAATTGTATTCCTCATAGGCCTTTGCAAAGGTCAACTCAGGATTGTGAAGCTTTTTATGCACACCCTGTTCACTGTAGTTCCTTTGGTTGCTCCTTTGCAACTGCACCGTCACCACCGTCTCCTCCACCTCCATCACCCCCTCCACCGCCACCTCCGCCACCCCCTCCTACACCTTTTGAATTTAGTCTATCTTCTTCTCCACCACCCCCACCTCCTTCTCCCCCACCTCTACCACCACCCCACCCCATCCCACCACCACCACCACCACCCACCCTCCTCCTCACCACCACCTCCTTCTCCCCCTTCTCTATCACCACCTCCATCACCACCCGACCTCCTCTCCTCCTCCACCACCACCACCTCCTCCTCCATCCTCCACCCTCACCACCTCCTCCCTCACAAATACAACAACAACAACAACAAACGCAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	215982	217442	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001284.1	PF00560.28	LRR_1	149	165	0.79
Glyur000008s00001284.1	PF00560.28	LRR_1	172	192	1.2
Glyur000008s00001284.1	PF00560.28	LRR_1	275	296	0.53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.637
SRR1783600	control	5.680
SRR1783602	moderate drought stress	5.647
SRR1811619	moderate drought stress	5.864

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.782
DRR006520	Root Summer glycyrrhizin high producing strain	5.523
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	9.323
DRR006524	Root Summer glycyrrhizin low producing strain	9.347
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.901
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	87.790
SRR2868004	Drought Stress (root)	168.802
SRR2967015	Control (root)	106.893

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.287
SRR9715740	Leaf	0.460
SRR9715741	Leaf	0.364
SRR9715739	Root	20.121
SRR9715742	Root	6.945
SRR9715743	Root	8.447

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.351
SRR8749028	MeJA induced 9h	8.972
SRR8749029	MeJA induced 9h	11.111
SRR8749030	Uninduced	224.680
SRR8749031	Uninduced	229.361
SRR8749032	Uninduced	105.305

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.554
SRR8400027	Control - Root	24.001