Gene detail

Gene detail information of Glyur000008s00001282

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G14750.1	9.00E-64	IQ-domain 19
NR	XP_004496689.1	0	PREDICTED: protein IQ-DOMAIN 1-like [Cicer arietinum]
Swissprot	tr\|Q8L4D8\|IQD31_ARATH	6.00E-10	Protein IQ-DOMAIN 31
trEMBL	tr\|A0A072VP65\|A0A072VP65_MEDTR	0	IQ calmodulin-binding motif protein {ECO:0000313\|EMBL:KEH43814.1}

Sequence

Transcript Sequence

>Glyur000008s00001282.1
ATGGGGAAAACAGGAAAATGGCTTAGAAACTTCTTGACAGGGAAGAAAGACAAGGAAAAGGAAAAATCTGCAACCAACCAGAATTCTTCAAATGGAACAGAAAAACCAACTACTCCAATTTCGACAACCCCAAAGGAGAAAAAGAGATGGAGTTTTCGAAGATCACCAGCCACAGCCACACCAACAGCTTCCAAGGAATTGAATTCTGTAGAATCAAATAATAATGTCACTGCTTCTTCACAGGCAGTGCAAACTGCTGCTACTGATATTCAGAGTGAGCAGAGGAAGCATGCCATGGCTGTGGCTGCTGCTACAGCAGCTGCAGCAGTGGCTGCTGCACAAGCTGCAGCTGCTGTGATTCGCTTGGCTTCTCCTGCTTCCAATGGAAGTGTTGAAGAGGCAAGAAAGGCATTGTGTGCTCTAAGGGGATTGGTGAAGTTGCAGGCACTAGTGAGGGGTCACCTGGTGAGAAAACAGGCCAAGGTAACACTGAGATGCATGCAGGCTTTGGTGACAGCACAAGCCAGAGCTCGTACTCAAAGGATCCGAACGGTGTCAGAAGGAAAGCCTAATCAAAAGCAATCAACGCATGGAAATACCACAGAAAACGATTTGTTCAGGCATATATATAATGAAATGGAAAGAGGNTTGGAAGACAACATCAAGATTGTAGAGATGGATTTTTGTGAATCAAAAGGTAACTCTAGAAGCAGAAGCAGCAGTGTATATGGACATCACGAACAGTCTGACCATAGATATTCAACAAATGATTCATACTCAAAGGAAGAAAACTACAAGGTATCACCAGCTCCATCAGCTTTGACAGAGTTGAGTCCAAGAGCCTGCAGTGGCCATTTTGATGAAGAATGCTTCAGTACAGCTCAGAAAAGCCCCCAATACTATTCTGCTGTGTCTAGAGGAGATGATTCAAAGCATCCTTTTGCTTTCCCTAGGCCATCTTATGCAGAACCTATGTCCTATGACTACCCTTTGTACCCCAGTTACATGGCTAACACAGAATCATCAAGGGCCAAAGTCAGATCACAGAGTGCACCGAAACAAAGACCGGATTCATTTGAGAGGCAACNGAGCCGGCGAAGAGCTTCGGTGGAGGGGAGAAATGTCCCAAGGCCAGTGAGGATGCAGAGGTCATCTTCACATGTGGGTGCCACTGCCCAGAACTACCAATATCCATGGTCAATGAAGCTTGACAGGTCCACAGTTTCACTCAAAGACAGCGAGTGTGGCTCTACAAGTACAGTGCTCACTAACACTAGTTACTACAGATCTGTTGTTGCATATGACGTGAGTACTAACCATTCTCATACCACTAGTTTTTATCATACAAATGCAAGAGAAAAACAAGAACAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	208974	210913	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001282.1	PF13178.1	DUF4005	297	385	1.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.209
SRR1783600	control	0.214
SRR1783602	moderate drought stress	0.121
SRR1811619	moderate drought stress	0.138

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.157
DRR006520	Root Summer glycyrrhizin high producing strain	0.155
DRR006521	Root Winter glycyrrhizin high producing strain	0.162
DRR006522	Root Winter glycyrrhizin high producing strain	0.158
DRR006523	Root Summer glycyrrhizin low producing strain	0.921
DRR006524	Root Summer glycyrrhizin low producing strain	0.799
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.127
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.135

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.520
SRR2868004	Drought Stress (root)	7.736
SRR2967015	Control (root)	7.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.375
SRR9715740	Leaf	0.046
SRR9715741	Leaf	0.162
SRR9715739	Root	0.036
SRR9715742	Root	0.182
SRR9715743	Root	0.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.051
SRR8749028	MeJA induced 9h	0.049
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.237
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.395
SRR8400027	Control - Root	0.563