Gene detail information of Glyur000008s00001267 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G60680.1 | 8.00E-105 | NAD(P)-linked oxidoreductase superfamily protein |
| NR | KEH43782.1 | 0 | aldo/keto reductase family oxidoreductase [Medicago truncatula] |
| COG | YP_004641887.1 | 1.00E-103 | auxin-induced protein PCNT115 [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|Q3L181|PERR_RAUSE | 1.00E-159 | Perakine reductase |
| trEMBL | tr|A0A072VPP5|A0A072VPP5_MEDTR | 0 | Aldo/keto reductase family oxidoreductase {ECO:0000313|EMBL:KEH43782.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 101466 | 107311 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001267.1 | PF00248.16 | Aldo_ket_red | 41 | 334 | 1.20E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.237 |
| SRR1783600 | control | 7.986 |
| SRR1783602 | moderate drought stress | 6.023 |
| SRR1811619 | moderate drought stress | 5.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.288 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.956 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.802 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.589 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.667 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.657 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 381.450 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 382.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 67.727 |
| SRR2868004 | Drought Stress (root) | 46.104 |
| SRR2967015 | Control (root) | 30.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 385.690 |
| SRR9715740 | Leaf | 988.312 |
| SRR9715741 | Leaf | 238.263 |
| SRR9715739 | Root | 5.650 |
| SRR9715742 | Root | 12.271 |
| SRR9715743 | Root | 10.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.618 |
| SRR8749028 | MeJA induced 9h | 1.460 |
| SRR8749029 | MeJA induced 9h | 1.640 |
| SRR8749030 | Uninduced | 1.041 |
| SRR8749031 | Uninduced | 1.829 |
| SRR8749032 | Uninduced | 1.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 40.235 |
| SRR8400027 | Control - Root | 36.249 |