Gene detail

Gene detail information of Glyur000008s00001265

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22845.1	6.00E-100	emp24/gp25L/p24 family/GOLD family protein
NR	XP_004496668.1	8.62E-149	PREDICTED: transmembrane emp24 domain-containing protein p24beta3-like [Cicer arietinum]
Swissprot	tr\|Q9LIL4\|P24B3_ARATH	3.00E-126	Transmembrane emp24 domain-containing protein p24beta3 (Precursor)
trEMBL	tr\|A0A072VQS5\|A0A072VQS5_MEDTR	5.00E-146	Emp24/gp25L/p24 family protein {ECO:0000313\|EMBL:KEH43778.1}

Sequence

Transcript Sequence

>Glyur000008s00001265.1
GCACGTCGTAGGCTTTCTCTACGTTTTACACGTAAGCCCTTCTAAACGACGCCCCAGTCATAGCGAAGCTACCTTCAAGTCCACGACGACTACAGTGATGCCGTTTTGTTGCGTTGCACTTGCAGGGACGAGAAACNGAGAAAGGATCAAACTTTCTCAAAGTTCCAGTCTCTTTTAATTAAGATCTAGGAAACATTTCTCACTTGCCCCACAACCTTAATCATCTTAATTTTCATTCCTGAATCCCCACAGGGAAAAACCCCTAAAAATAAATAAATAAAAAGGGGGCAAAGTGATGGAGCAAGGGCAGGGAAAGAGAAGCGCGAAGATGTGGATGGTTTTGATTTGTTTGATGTTCAGTTTCTTTGGTCGCATCGAATCGCTGTCTGTGACAGTGAACGACGTCGAATGCCTCTACGAGTATGTGCTCTACGAGGGTGACACTGTTTCAGGGAACTTTGTTGTCGTCGACCATGACATTTTCTGGAGCTCCGATCACCCCGGCATTGATTTCACGGTGACATCTCCTGGAGGTAATACCGTCCAAAATATCAAGGGAACCTCTGGCGACAAGTTTCAATTTAAAGCCCCAGCACATGGAATGTATAAATTCTGTTTTCATAACCCGTACTCGACACCTGAGACTGTTTCTTTCTATATCCATGTTGGTCATATTCCCTCTGAGCATGATCTTGCCAAAGATGAGCATTTGGACCCAATTAATGTTAAAATTGCCGAGCTCAGAGAGGCACTGGAGTCTGTTACCGCTGAACAAAAGTACTTGAGAGCTCGTGATGCAAGGCATCGCCATACGAACGAGAGTACACGTAAGCGTGTGATACTCTACACTGTGGGAGAGTACCTTCTGTTGGCTGCTGTGAGTGCACTCCAAGTCATATACATCAGGCGCCTTTTCAGCAAGTCAGTGGCATACAACCGTGTTTGAGTCCGAGTCCCCTCATTAACGTTATCATGGTTTCCTTCTTTAGCAACAGGGTTAGGCTTAGAGATGCGTTTTCTCTGTGAAACAACATACATTCCTTGGTGAACACTTTTCTCTCTCTTTCCAACAGAGACATGATTTGTACTTTGATACTCAACAAGATTTTTTAAATTACTTATATTACTCTGAATTTCTGTGGATTTTGACTGGAAATTAAAGTCTTGTGAGAGCAACACTGTGTATGTAAAATGACATATACTCTCTGTGTTTACGATTTCTCAAACTGTTGATGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	96097	99363	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001265.1	PF01105.19	EMP24_GP25L	35	207	1.70E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	88.883
SRR1783600	control	89.236
SRR1783602	moderate drought stress	74.642
SRR1811619	moderate drought stress	74.200

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	82.616
DRR006520	Root Summer glycyrrhizin high producing strain	82.054
DRR006521	Root Winter glycyrrhizin high producing strain	206.567
DRR006522	Root Winter glycyrrhizin high producing strain	201.206
DRR006523	Root Summer glycyrrhizin low producing strain	78.103
DRR006524	Root Summer glycyrrhizin low producing strain	77.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	42.389
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	130.182
SRR2868004	Drought Stress (root)	110.770
SRR2967015	Control (root)	109.700

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	85.386
SRR9715740	Leaf	67.710
SRR9715741	Leaf	86.870
SRR9715739	Root	83.258
SRR9715742	Root	65.772
SRR9715743	Root	69.898

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	98.334
SRR8749028	MeJA induced 9h	133.832
SRR8749029	MeJA induced 9h	105.502
SRR8749030	Uninduced	142.106
SRR8749031	Uninduced	98.879
SRR8749032	Uninduced	110.184

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	109.150
SRR8400027	Control - Root	102.503