Gene detail

Gene detail information of Glyur000008s00001260.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04210.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004507387.1	0	PREDICTED: uncharacterized protein LOC101513307 [Cicer arietinum]
COG	YP_001869272.1	2.00E-21	Miro domain-containing protein [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	2.00E-18	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|A0A072UX07\|A0A072UX07_MEDTR	0	LRR receptor-like kinase family protein {ECO:0000313\|EMBL:KEH30365.1}

Sequence

Transcript Sequence

>Glyur000008s00001260.1
ATGCAGCTTCTTAGCTCCGACGAAACCGCGCCCGAAGAAGCTCGCGACTTTCCCGAGAAACCGGAAGAGCAGAACACCCCGAACGATTATTCCTCGGACCCCGCCGGAACCGATGAAGGCGNGGCCCTCGACGTGTCGGGGAAGAGCTTGGAGTTTCCGGCGCCGGAGAACGCCGAAGACGACGCCGTNGAGAGCTTGTACATGTACAAGAACGTTTACAGCTTGATTCCCAAGTCGGTGGGTGGCCTCGTGCGGTTGAGAACGCTGAAATTCTTCGGGAACGAGATTAACTTGTTCGCCCCAGAGTTTGGGAACATGACGAGGTTGGAACGCTTGCAGATGAAGGTGTCTTCTCCCGGTATTGGTGGGTTGCCATTGCACAAATTGAAAGGTTTGAAGGAGCTTGAGCTTTCCAAAGGCCCTCCAAGGCCTTCTGCGTTCCCCATTTTGACCGAGATTGCTGCTCTCAAGTGCCTCACCAAGCTTTCCATTTGTCACTTCTCTATAAGGTTNGTATACCTTCCTCCGGAAATTGGGTGCTTGAAGAATCTGGAGTATCTTGATCTCTCATTCAATAAATTGAAGACATTGCCCTCCGAGATTATTTATTTGGATGGATTGATATCCATGAAAGTTGCGAATAACAAGTTGGTGGAACTACCGCCAGCTATGGCCTCCCTGTCAAGGTTGGAGAGTTTGGACCTGTCAAATAATAGGTTGACTTCATTAGGATCCCTTGAACTTGGCTCAATGCGTAGACTTCAGGACTTAAATCTTCAGTGTTTTCCCTGGAGGGACCGCATTGAAGGTGCCTCTGTGCATCCAAGCACAACAAACTACCCAGCATTTTTCAAATTCCTTCATGGATATGCTGCAATATGGAAGGAAATGATGGAGGTAGAAGCAAAGACGATTGTAGCAGTTCTTCTGTTGAAATGGATGTCTATGAAAGCAGTTTACAGGAAAATGATGAAACTCTTTCTCATGTACTTGTATTTGAAATGGAACTTTCACNTTTCTGTGAATTCTTTTGCAGGCCCTCGTAATACCTCATCAAGCGTATTAATGAGCTCCTCNTCTAGCAGATGTTTTGCAGCCCGTAAGTCAGGTAAACGGTGGAAGCGGCGGCACTATTTACAGCAGAAAGCTCGTCAAGAACGGTTGAATAACAGCAGGAAGTGGAAAGGTGTAGATCATGACCAGTTGTTGAGCAAGAAGATTCACAGAATTTCTGAACCAGGAAATTTGGATAGTCTTGCTTCTGAAAATTGCACAGAAACTGTATCATCAGACAATGGGAACCTGGATGAAAATAGTAAAAGAATATTCTCTGAAGAAGCAGTGAACGACAATTTAATNGATAATGTCAACAATGATGAACTAGTTATTGAAAAGCAGTTTTCTCAAGAAGATTGCTGCACTTCTGAAAATAAAGATGAAAAAGATGCAACCTTACACTCCTTAGAGAATGAGCAAAGTGAACAGGAGGAAGCATCATGCTCATGTTCAGATTTTTTAAAGTGTAGTTCTAAATCAAAGAGGCATTCAGATCGGGATCTTGATAATCCTAAACCATGCAAGTCTAGAAAACCGATTGTTGATAGCTCATTATTGTCTTGCAAGTACAGTACANTCTCATTTTGTGGCATTGAGGACCATCTATCAGATGGTTTTTATGATGCAGGACGTGATCGGCCATTTATGCCTCTTGAGAGTTATGAGAAAAATCAGTGTCTTGCTTCTCGTGAAGTCATCCTGCTGGACAGACAAAGGGATGAAGAGTTGGATGCTGTTATGCTTTCTGCTCAGGCATTGGTCTATAATTTGAAGCAGTTAAATGGTTTAAACNGACCTGGGAGCCAGGGTGCGGTTGATAACTTGCAGGCAGCATCATTGCTTGCACTCTTTGTATCCGATCATTTTGGTGGAAGTGATAGAGGTGCTATTATAGAAAGGACACGGAAATCTGTTTCTGGTTCAAACTATAATAAGCCTTTTGTCTGTACATGCTCAGCTGGAAGCAGCACAAGTATAAATGCTGTCACTGAACCAGTTGTAAACGCCATAGAAGATATTGCTCTTTCTAAGATCTCTGAAAAATCTCTTGATTCTATCAAAAAAAGGCAAAATTCAATCATAGTTCCAATTGGGTCTGTGCAGTATGGTGTATGTAGGCATAGAGCTCTGCTTTTTAAGTATTTATGCGATCACATGGATCCACCTGTACCTTGTGAGCTTGTTAGGGGTTACCTTGATTTTTCACCACATGCCTGGAATATCATTCTGATAAAGAGGGGTGCTACATGGGTTCGAATGCTTGTTGATGCTTGCCGACCTCATGATATAAGAGAAGAGAAAGATCTGGAATACTTCTGCAGGTACATACCTCTTAGTCGAACCGAAATCCCTCTTTCATCCAGTAGTCGTCTCAGTACTGATTATTCCTTTCCATCTCTCTCTACTTGTGATCATCTTGAGAAAAAAGCTTTGACTACTTTAGTTCGGTGCAAATTTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTACTTTGGAAGTGCAGGAGAGTTCAGCTGACAAAATTAAAAATTTCGAATATAATTGTTTGGGAGAAATTAGAATTCTTGGTGCTTTAAAACATCCCTGCATAGTAGAAATGTATGGACACCAAATATCATGCAAATGGACTATCTCTGCTGATGGTAATCCTGAGCATTGTGTATTGAGATCTGCAATTTTTATGGAGTACGTGGAAGGGGGCTCCTTAAAAACCTATCTAGGGGAGCTGTCAGAAACCGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGTATATTGCCAAAGATGTCTCACGTGCTTTGTTGGAGCTGCACTCGAAGCACATAATTCACCGTGACATAAAAAGTGAAAACATTCTGTTTGATTTTGATAGGAAGAGAGATGATGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCACCTTTACATGCATGCTGTATTGCTCATGTGGGAACACCTCCTCCTTTTGTGTGTGTTGGAACACCTCGGTGGATGGCTCCAGAGGAAGCTGATATTTGGTCATTTGGATGTTTACTTTTGGAGATGCTGACTCTGCAAATTCCATATTCTGGAGTACCTGATTCACAAGTCCATGATAGTCTGCAGATGGGTAAACGACCACAATTAACTGATGAGCTTGAGGCATTGAGTTCAATGAATGAACCCACAATGGTTCAATCCTTTGAAGAGCTGGAAAAATCAGATGCTGAGATAGGCACGTTGAAGTTCCTTGTTGATTTGTTTCATAGGTGTGTGGAAGAAAATCCAAATGAACGACCTACAGCTGAAGAAATCCACGAAATGCTGCTTGGACACACGAGTCGCCTACAAGTTCAAGATGTTAGAAAGACATAGACAGGCTATTGGGGTGACCCTGTCCTGGTGAAATATATTATCATAATAAAATATATTCATTCTTTTTCTTCATAAATTGTTGTGGTTTACCCGAGAATAATTGTTCTTTACTAGGTTTTGGTCTTGAGTGAGTTGCATCTTATGTCCATTTTTCAGGGNTAGATCCTGCGGCTCTAACATAATCTGATTGAGATCTTTATTTGTAGCCACGTCTCTTTTCGGGTTGTAAATGTTGAGGCNTATATGTAATTCAAAAATTCTGCAAGTGGGACTGATTAATTTATCGATGCGTTTGAGTTGTAACTTGTATGCTGGTTTATA

Protein Sequence

>Glyur000008s00001260.1
MQLLSSDETAPEEARDFPEKPEEQNTPNDYSSDPAGTDEGXALDVSGKSLEFPAPENAEDDAVESLYMYKNVYSLIPKSVGGLVRLRTLKFFGNEINLFAPEFGNMTRLERLQMKVSSPGIGGLPLHKLKGLKELELSKGPPRPSAFPILTEIAALKCLTKLSICHFSIRXVYLPPEIGCLKNLEYLDLSFNKLKTLPSEIIYLDGLISMKVANNKLVELPPAMASLSRLESLDLSNNRLTSLGSLELGSMRRLQDLNLQCFPWRDRIEGASVHPSTTNYPAFFKFLHGYAAIWKEMMEVEAKTIVAVLLLKWMSMKAVYRKMMKLFLMYLYLKWNFHXSVNSFAGPRNTSSSVLMSSSSSRCFAARKSGKRWKRRHYLQQKARQERLNNSRKWKGVDHDQLLSKKIHRISEPGNLDSLASENCTETVSSDNGNLDENSKRIFSEEAVNDNLXDNVNNDELVIEKQFSQEDCCTSENKDEKDATLHSLENEQSEQEEASCSCSDFLKCSSKSKRHSDRDLDNPKPCKSRKPIVDSSLLSCKYSTXSFCGIEDHLSDGFYDAGRDRPFMPLESYEKNQCLASREVILLDRQRDEELDAVMLSAQALVYNLKQLNGLNXPGSQGAVDNLQAASLLALFVSDHFGGSDRGAIIERTRKSVSGSNYNKPFVCTCSAGSSTSINAVTEPVVNAIEDIALSKISEKSLDSIKKRQNSIIVPIGSVQYGVCRHRALLFKYLCDHMDPPVPCELVRGYLDFSPHAWNIILIKRGATWVRMLVDACRPHDIREEKDLEYFCRYIPLSRTEIPLSSSSRLSTDYSFPSLSTCDHLEKKALTTLVRCKFGSVEAAAKVRTLEVQESSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHQISCKWTISADGNPEHCVLRSAIFMEYVEGGSLKTYLGELSETGEKHVPVELALYIAKDVSRALLELHSKHIIHRDIKSENILFDFDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPFVCVGTPRWMAPEEADIWSFGCLLLEMLTLQIPYSGVPDSQVHDSLQMGKRPQLTDELEALSSMNEPTMVQSFEELEKSDAEIGTLKFLVDLFHRCVEENPNERPTAEEIHEMLLGHTSRLQVQDVRKT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	61146	68164	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001260.1	PF00560.28	LRR_1	183	200	0.027
Glyur000008s00001260.1	PF13855.1	LRR_8	209	260	7.40E-07
Glyur000008s00001260.1	PF14381.1	EDR1	690	777	4.50E-14
Glyur000008s00001260.1	PF00069.20	Pkinase	853	1125	2.80E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.179
SRR1783600	control	8.257
SRR1783602	moderate drought stress	8.049
SRR1811619	moderate drought stress	7.979

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.290
DRR006520	Root Summer glycyrrhizin high producing strain	13.070
DRR006521	Root Winter glycyrrhizin high producing strain	8.050
DRR006522	Root Winter glycyrrhizin high producing strain	7.702
DRR006523	Root Summer glycyrrhizin low producing strain	12.954
DRR006524	Root Summer glycyrrhizin low producing strain	12.987
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.412
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.323

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.842
SRR2868004	Drought Stress (root)	22.702
SRR2967015	Control (root)	22.236

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.128
SRR9715740	Leaf	14.911
SRR9715741	Leaf	17.541
SRR9715739	Root	2.795
SRR9715742	Root	14.058
SRR9715743	Root	12.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.561
SRR8749028	MeJA induced 9h	13.951
SRR8749029	MeJA induced 9h	7.297
SRR8749030	Uninduced	8.334
SRR8749031	Uninduced	6.081
SRR8749032	Uninduced	4.461

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.595
SRR8400027	Control - Root	21.068