Gene detail

Gene detail information of Glyur000008s00001259

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G43810.2	Stabilizer of iron transporter SufD / Polynucleotidyl transferase
NR	XP_004496660.1	PREDICTED: protein argonaute 10-like [Cicer arietinum]
Swissprot	tr\|Q9XGW1\|AGO10_ARATH	Protein argonaute 10
trEMBL	tr\|V7BBW8\|V7BBW8_PHAVU	Protein argonaute {ECO:0000256\|RuleBase:RU361178}

Sequence

Transcript Sequence

>Glyur000008s00001259.1
GCAACATGCCAGTGAGGCAGATGAAAGAAAGCTCAGAGAAACACCTTGTGATCAAAACCCACTTGCAGAACCCCATGAATAATAATACAGCTAAGAAGGCACCCAAAGCTGCCCAAAATGGCAAAGGTCCACCCCCACCAGAANGCCATAGCCAAACTTCGTCTCAACCAAGGAACAAGGGAAGANGAAGGGGAAGAGGTGGCAGAAAATCTGATCAAGGAGATGTTTTGATGAGACCCAGTTGCAGGCCCTGCACNTCAACAAGTACTGCAAATGGAAATGTTGAAAATGGATACACCTCTGGTGGCATAGACATGGGTTTTCCCACTTCAAGCAAGTCCTTGAGCTTTGCTCGTAGGCCTGGATATGGACAAGTTGGGACAAAATGCATTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATTACCCCGGAAGTGTCTTCAAGAGCNGTAAACAGGTCCATCATAGCAGAACTAGTGAGGCTGTATAAAGAGTCTGACTTGGGGATGAGACTTCCAGCATATGATGGCAGAAAAAGTCTGTATACCGCAGGGCAGCTTCCCTTTACCTGGAGAGAGTTTAACATCAAGCTTGTAGATGAAGAGGATGGAGTTAATGGCCCCAAAAGGGAAAGAGAGTACAGGGTGGTGATCAAGTTTGTTGCTCGGGCAAACTTGCATCACTTGGGCCAGTTTCTAGCTGGTAAGCGTGCCGATGCACCCCAGGAGGCACTTCAAATTCTTGACATTGTACTAAGAGAGCTATCAACTAAGAGGTATTGCCCCATAGGGAGGTCTTTCTTTTCACCGGATATTAGAACACCACAACGGCTTGGAGAGGGATTGGAGTCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATAGATATGGCATCTGCTGCATTCATTGAGCCTCTTCCAGTGGTAGAATTTGTTGGCCAGCTATTAGGGAAAGATGTGCTGTCAAGGCCATTGTCAGATGCTGATCGCATTAAGATTAAGAAAGCTCTTAGAGGAGTTAAAGTTGAAGTAACACATAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTGGTTGAATACTTCCAAGAGATGTATGGTTTCACCATTCAATGTACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCTAACTACTTGCCTATGGAGGCCTGCAAAATTGTTGAAGGGCAACGTTATACAAAGAGATTGAATGAGAAGCAAATCACTTCTCTATTGAAAGTTACTTGCCAGAGACCTCGTGATCGGGAAAATGACATTTTACGGACTGTTCAACATAATGCTTATGACCAAGATCCTTATGCAAAGGAATTTGGAATTAACATCAGTGAAAAGCTAGCTTCTGTTGAAGCTCGAATTCTTCCTGCTCCTTGGCTTAAATATAACGAAAGTGGGAAAGAAAAGAACTGTTTACCCCATGTTGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAACCGGTGGGCATGCATAAATTTTTCACGGAGTGTGCAAGATAGTGTTGCTCGCACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGCATGGAATTTAATCCAGAGCCTGTTATCCCTATCTACAATGCCAAGCCTGAGCAGGTGGAGAAAGCTCTGAAGCATGTTTACCATGTGTCAACGAACAAAACTAAAGGNAAGGAATTGGAGCTTTTGTTAGCAATATTGCCAGACAATAATGGGTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTGATTTCACAATGCTGTCTAACAAAGCACGTCTTTAAAATCACNAAACAGTACTTGGCTAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGCAGAAACACTGTTCTTCTTGATGCTGTGAGCTACAGAATACCATTGGTTAGTGACATACCAACCATAATTTTTGGAGCAGATGTTACCCACCCGGAAAATGGAGAAGACACTAGNCCCTCAATAGCAGCTGTAGTAGCATCTCAAGATTGGCCTGAAGTGACAAAATATGCCGGTTTAGTGTGCGCTCAAGCTCATAGACAGGAACTTATACAAGATTTGTACAAAACTTGGCATGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATACGAGATTTACTGATTTCCTTTAGAAAGGCAACGGGACAAAAACCACTACGAATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCAATCCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCAGTAACTTTCATAGTTGTACAAAAAAGACATCATACTCGATTGTTCCCAAACAACCACAGGGACAGGAGCAGTACAGATAAGAGTGGGAATATATTGCCTGGGACTGTTGTTGATTCTAAAATTTGCCATCCAACAGAGTTTGATTTTTATCTCTGTAGTCATGCTGGCATCCAGGGTACCAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAAAACAATTTTACAGCAGATGGAATTCAGTCTTTGACAAACAATCTTTGTTATACATATGCCAGGTGCACACGATCCGTATCTGTGGTTCCTCCAGCATATTATGCACATCTAGCGGCCTTTCGAGCCCGTTTCTATATGGAACCAGAGATGCTGCAAGAGACTGGCTCTACAGGTGATGGTAATTCTAGTCATAGTTCCAAGGGAACACGAGCAGCTGGAGAATTTGGTGTCAAGCCATTACCAGCCTTGAAAGAAAATGTGAAGAGAGTGATGTTTTACTGTTAGACTGATGCATAATGGCTTGACATTGGAGAATGACGGCATCAAATGGTAGATAAGTGAAAACATTAATCATTGAATGCAATGTTCACCTCCGATTACCTTGTACATTAGTCGCGGTTCGCGCATAGCGGTAAGGTTGTTTCCCATGATAGGTCTTGAGGCTTAGTTTAGAACTCCTACTAGAAGTATGAAGTTTCATAGATGTTGTCAAAGTGGCATTGTAAAGAGTATTCTGTNTCCATCTTTATTGTAGAAAATTTTGCCCCAAGGCCTTTACACAGATGTTGAAGTGAAAATTTCCCAGGGGAAGTTTTTCTAATTAGTCTTGAAAACATTAACCCAACATTCATGTTTATCCTGCACCATAGCTGAAGCAAAGNGAGTTAAGTCAATGTAACATTTCTCTATGTAAATAAACGACAAAAAATGT

Protein Sequence

>Glyur000008s00001259.1
MPVRQMKESSEKHLVIKTHLQNPMNNNTAKKAPKAAQNGKGPPPPEXHSQTSSQPRNKGRXRGRGGRKSDQGDVLMRPSCRPCTSTSTANGNVENGYTSGGIDMGFPTSSKSLSFARRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSRAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGQLPFTWREFNIKLVDEEDGVNGPKREREYRVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRYCPIGRSFFSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIQCTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGINISEKLASVEARILPAPWLKYNESGKEKNCLPHVGQWNMMNKKMINGMTVNRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSYRIPLVSDIPTIIFGADVTHPENGEDTXPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFPNNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMLQETGSTGDGNSSHSSKGTRAAGEFGVKPLPALKENVKRVMFYC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00008	40879	47997	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000008s00001259.1	PF08699.5	DUF1785	271	322	7.30E-21
Glyur000008s00001259.1	PF02170.17	PAZ	324	459	7.30E-34
Glyur000008s00001259.1	PF02171.12	Piwi	612	931	1.40E-112
Glyur000008s00001259.2	PF08699.5	DUF1785	271	322	7.10E-21
Glyur000008s00001259.2	PF02170.17	PAZ	324	459	7.00E-34
Glyur000008s00001259.2	PF02171.12	Piwi	612	910	2.10E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.705
SRR1783600	control	1.650
SRR1783602	moderate drought stress	3.409
SRR1811619	moderate drought stress	3.404

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.783
DRR006520	Root Summer glycyrrhizin high producing strain	4.687
DRR006521	Root Winter glycyrrhizin high producing strain	0.182
DRR006522	Root Winter glycyrrhizin high producing strain	0.218
DRR006523	Root Summer glycyrrhizin low producing strain	12.707
DRR006524	Root Summer glycyrrhizin low producing strain	13.017
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.816
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.826

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.674
SRR2868004	Drought Stress (root)	14.042
SRR2967015	Control (root)	19.315

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.097
SRR9715740	Leaf	0.205
SRR9715741	Leaf	0.639
SRR9715739	Root	0.635
SRR9715742	Root	2.873
SRR9715743	Root	3.457

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.878
SRR8749028	MeJA induced 9h	0.119
SRR8749029	MeJA induced 9h	0.426
SRR8749030	Uninduced	0.057
SRR8749031	Uninduced	0.020
SRR8749032	Uninduced	0.215

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.148
SRR8400027	Control - Root	15.968