Gene detail information of Glyur000008s00001254 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51680.1 | 7.00E-12 | hydroxyproline-rich glycoprotein family protein |
| NR | KHN02764.1 | 3.67E-119 | hypothetical protein glysoja_016006 [Glycine soja] |
| trEMBL | tr|I1LDY5|I1LDY5_SOYBN | 6.00E-120 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G38740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00008 | 12303 | 13596 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000008s00001254.1 | PF05097.7 | DUF688 | 5 | 48 | 3.80E-07 |
| Glyur000008s00001254.1 | PF05097.7 | DUF688 | 51 | 146 | 0.0001 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.238 |
| SRR1783600 | control | 0.238 |
| SRR1783602 | moderate drought stress | 0.343 |
| SRR1811619 | moderate drought stress | 0.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.293 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.202 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.430 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.817 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.203 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.203 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.257 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.832 |
| SRR2868004 | Drought Stress (root) | 16.012 |
| SRR2967015 | Control (root) | 12.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.349 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.060 |
| SRR9715739 | Root | 0.179 |
| SRR9715742 | Root | 0.227 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 99.318 |
| SRR8749028 | MeJA induced 9h | 99.926 |
| SRR8749029 | MeJA induced 9h | 19.380 |
| SRR8749030 | Uninduced | 24.329 |
| SRR8749031 | Uninduced | 5.428 |
| SRR8749032 | Uninduced | 5.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.833 |
| SRR8400027 | Control - Root | 1.493 |