Gene detail

Gene detail information of Glyur000007s00002889.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19490.1	7.00E-35	Basic-leucine zipper (bZIP) transcription factor family protein
NR	XP_003625781.1	0	BZIP transcription factor bZIP39 [Medicago truncatula]
Swissprot	tr\|P42776\|GBF3_ARATH	2.00E-06	G-box-binding factor 3
trEMBL	tr\|G7L602\|G7L602_MEDTR	0	BZIP transcription factor {ECO:0000313\|EMBL:AES81999.1}

Sequence

Transcript Sequence

>Glyur000007s00002889.1
CTACTACTACTACTACTACCCTCCTACCACCGTTACGATATCCTTTTTCTTCCTCTCGTTTGTGTCATGAATATTACGATGGATGTGGAATCAGTGAAACGCTGTGCATCGACCTCTTCTTCTTCTTCTTCTTCTTCTTATGATAATTATTGTTCTTCTTCGTGTTCGTCTTCGGGTGCGTCGGAGGAGCGGGTGGATCGGGTCGTGAAGACGGAGGAGATTGAGGCGGCGGAGACTCTTGCTGACCTGGCACACTTGGCAATGCGTCACACTCACTCCGCCGATAAATGCTGCACCAAGTACAAAGCCAAACGAGACACCAGCCGATTCAACCGCGAGTCACCGATTCCTGACTCGGATCCCCCTCGCTCTCCCCTTCGCCCTGGGGACCAAGCAGTTGCAGGTCAGCAGCTAGATGAAAAAGTATGCACTATTAAATCTGTAGAAACAGAAAGGATTCAGCAGAATGACTGCTTAAGACACATGAAGGTGGAGCAGGATGCTGATTTACCTAAGACTGCAAGGTACTCTTCAGTTCGCTGCAGCAAGTCAAGGCGCAATTTAACCGAGGAAGAAAAAGAAGCACGGAGGATACGCAGGGTATTGGCAAATAGAGAGTCAGCTAGGCAGACAATTCGCCGTAGGCAGGCTCTGAGTGAGGAGTTAACCAGAAAAGCTGCCACCTTAGCGCAGGAGAATGAAAACCTAAAGAGGGAGAAGGAAATGGCTTTGAAAGAGTATCAGTCTTTAGAGACTACAAATAAGCACTTAAAGACACAAGTAAGATGTTTTGCTATGAAGAAATCTATAACGAAGTCAATAAACTCTGAAGTGGAGAAAACTCCTGTTGAGCAGGAGTCATCTGTGGCTGATGTAACACCTGTGTCGGGCAATAGTCCATGGTTTCTTTGTAACCATATTCCAGTTACACAATTATTTTGGCCCTCCGTCTTTCAGTCTTCTAATCCAGTTCAATTACAACATACACCATTTACTTCCATTGCCATTCCATCAAATGTTCATGTTCCATGTTCTTCGGAGTCTGAATCATGTCACAAGCAAAATAACCTTATACATGACAATCAAACACAAAATCCATTGTACATGTTTCCATGTCCCTGGTTATACCCTCTTCCAGAGTTTGGAAATGGACAATTACCACCTTCCAGTGGCCTAAAAGATAAACATGATAAACTTCCTCTAGCTAGACAATGTAGTACTAGTTTATCTTTAAATACAATGGTAAATGGGGATTATCAAGCAACTTCACCTATCAAACTTAAAACAGAATCTTCTGACAGCTGGACAGAAGCCAGATCTATTAATGACCCTGNTCATGCCACTCCAAGTTTTTCATTGGATGGAGGTGAGCAGAAAACAGGATGTCACATGACAGAAAAGTTCCATGGATCCGCACTTGGTTGTAATGGACATGCTTCTGCTGTCAAGCGAGAACCCGAGCTTCAATTACATTCCACTCCCAACACCAAGATATCTGTAACAGCTTCTCATAATGTAACTTCTTCACTGGAAAAGAAACAAGAGCAATTCATATGCCCAGGTAAAAATCTCGTGGATGCAGCTGCTGCGGCAGAGGCAAGAAAGAGGAGAAAGGAACTAACAAAGCTAAAAAACATCCAAAACCGCCAGTCCCAGATGGAGTGTTGACAGCGGTGACAGCGTTGAAGATTGAAGTTCTTTTTCTTTTTTTCTAATCATCTTGCTTGTTTCCTTTTCATTTTCTTCCTACTACAGGGATTTATTTCCCTCCTGGGAAAGAGTAAGGGACAGGAGGAAGTTGGTTTCTTAAAGTGGTCAAGCCGAACAAAGTTTTTTATTGGCAGTTATATGACCCGGATTCTTCAACTTTCAAAGATGTTTCTGAGCATTTTAATTAATCGCAGAAATTGCGTGCACAATATGTCGTATAAGTAGGACAGAAGGAAATATAGATTGTTAACAATGTTGAGCTCAAAATGCAGTTAACCAGGTTTTTCGGTGCATGCGCACAAGGGCTTTTGATGTCATGCATGTGGATTCTCTTATATTTCACAGCTTAAATATCTATAAGCTGTTTATTATCCTTTTTATAACCTTAACATTGTTATTTTAATGTTTATTAGGATTTTGGTCTACACGGAAAATTTTGACCCTAGAACTTTTTTTGTCCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	716816	721247	-

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002889.1	PF00170.16	bZIP_1	170	232	8.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.174
SRR1783600	control	0.155
SRR1783602	moderate drought stress	1.100
SRR1811619	moderate drought stress	1.010

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.899
DRR006520	Root Summer glycyrrhizin high producing strain	0.889
DRR006521	Root Winter glycyrrhizin high producing strain	46.343
DRR006522	Root Winter glycyrrhizin high producing strain	45.025
DRR006523	Root Summer glycyrrhizin low producing strain	0.658
DRR006524	Root Summer glycyrrhizin low producing strain	0.712
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.042
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.085

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.611
SRR2868004	Drought Stress (root)	0.372
SRR2967015	Control (root)	0.831

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.281
SRR9715740	Leaf	1.117
SRR9715741	Leaf	1.073
SRR9715739	Root	0.000
SRR9715742	Root	0.867
SRR9715743	Root	0.966

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.486
SRR8749028	MeJA induced 9h	43.330
SRR8749029	MeJA induced 9h	18.331
SRR8749030	Uninduced	4.604
SRR8749031	Uninduced	2.945
SRR8749032	Uninduced	7.083

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.793
SRR8400027	Control - Root	1.430