Gene detail

Gene detail information of Glyur000007s00002888

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G03620.1	0	Subtilisin-like serine endopeptidase family protein
NR	XP_004494157.1	0	PREDICTED: xylem serine proteinase 1-like [Cicer arietinum]
COG	YP_004097803.1	3.00E-81	peptidase S8 and S53 subtilisin kexin sedolisin [Intrasporangium calvum DSM 43043]
Swissprot	tr\|Q9LLL8\|XSP1_ARATH	0	Xylem serine proteinase 1 (Precursor)
trEMBL	tr\|A0A068BBQ4\|A0A068BBQ4_CICAR	0	Subtilase {ECO:0000313\|EMBL:AIC80770.1}

Sequence

Transcript Sequence

>Glyur000007s00002888.1
ATGATGATCAGTAAGAAGTCTAAAATAGACCAGTCAACCCGCGTTTCCACCATAATAAAGCCCAACGTTAAAAATAACAATAACAATAATAATCCCCGTGCAGGGCAAAGGGTGCTGCAAGCNGAGGCACTCCTTCAACACCAACAACAACAGCCTAATGAATGCCCAACAAAATTGTTCGTTTTTGGGGACTCATATGCTGACACGGGAAACATCAGAAAAGGGTTGGCTAATTCATGGAAAGACCCTTATGGAGTCACATTTCCCGGCAAGCCCGCCGGAAGGTTCTCCGACGGCAGAGTCCTCACCGACTACATCGCTAAGTATTTGAAAGTGAAATCGCCAGTCCCATACAGAATGAGGAAACTGATGCCGCAACATTTGAAGTATGTGAAGTATGGGATGAACTTTGCATTTGGTGGTACTGGGGTATTTGAGACGTTGAATCCAGGCCCAAACATGACAACCCAGATCGATTTGTTTCAGCAGGTCATCAGAGACAAAGTGTACACCGCCTCAGATCTCACCAATTCTGTGGCCCTCGTCTCTGTTGCTGGAAATGACTACACTCGCTACATGGCCACAAATGGCTCTGCTGAGGGTTTACCCTCATTCGTGGCCGCAGTGGTGAACCAGACAACAACGAATCTGATTCGCATNAGAGGGTTGGGAGTGAAGAAAGTTGTGGTGAACGGTCTACAACCCGTTGGATGCCTTCCTCAGATGACAGCATCATCCTCGTTCCAGCGTTGCAACGACACCTCCGACAACCTCGCACTTCTCCACAACAACCTCTTGAACCAAGCCGTTNCCAGATTGAACCAACAAACCACCACCAACGGTCACTATAATTATTCCTCGCCGCCCTTCCTAGTTCTTAACCTCTACGACAGCTTCATGTCGGTGCTGAACCACCCTTCCACACACAACATTCAGAACCAGNTGAAGCCGTGCTGCGTTGGGGTGAGCAGCGAGTACTCGTGTGGAAGCGTTGGCGAGAACAACGTGAAGAAGTATCGGGTGTGCGAGGAGCCCAAATCGGCTTTCTTTTGGGATCAGGTGCACCCCACGGAGGCAGGGTGGCACGCTGGATCAAATCAACATGAAAGAAAGCCTTATATCGTATACATGGGAGAACTACCATCGGCAAGAACCTATGCTGTGGAACAACACCATCACAACTTGCTAGAGGCTGCAATTGGAGACAAGCAGTTAGCCAGAGAGTCCAAAATACATAGCTATGGAAAGAGTTTCAACGGATTCGTTGCACGACTTTTGCCACATGAGGCAAAGAAACTGCGAGAGAAAGACAATGTGGTCTCTGTTTTTCCAAATACACACCGCAAGCTACACACAACAAGAACATGGGATTTCCTGGGAATGCCCCTGAACGTGAAGAGAAACAACAACGTAGAAAGCCATATCATTGTGGGCGTGTTAGACACAGGTATTTGGGTTGATTGCCCCAGTTTCAACGATGAGGGATATGGACCTCCCCCGCGTAGATGGAAGGGCNAATGTGTAACGGGAGCCAACTTCACCGGCTGCAACAACAAGGTGATCGGAGCAAAATACTTCAACCTCGACCCAAGCGGTCCAACAATCGAGAACCCGAGTCCGGTGGACGATCAGGGCCACGGCACACACACGGCGTCGACGGCGGCCGGCGTGGCGGTGAAGGACGCAAGTNTATACGGCATTGGCAAAGGCACAGCGCGTGGCGGTGTGCCATCGGCACGCATCGCAATGTACAAGGTGTGCTGGAGCATTGGGTGCAGCGACATGGACATGCTTGCGGGTTTCGACGAGGCCATCGCGGACGGCGTGAATTTCATATCGGTGTCGATTGGTGGGCCCTCACGTGACTTCTTCTCTGACCCAATCGCAATTGGATCATTCCACGCTATGAGGAGAGGGGTCCTCACTTCTTGCTCCGCTGGTAACGATGGCCCTCGCCCTATGTCTGTTGAGAATGTCGCTCCCTGGATCATGACCGTCGCTGCTTCTACCGTTGATAGACAGTACACCACATTTGTTGCCTTCGGTGATGGAAACAACACTACAATGTATCCGTTGACCAGTGGAGTACTTGCCGCGAACCTTAGCGGAGATGGCTATGGGAATCCTAGTGGTTGTGATTATGGGACTCTAAGCAAGGATAAGGTGATGGGAAGGATAGTGTACTGTGTTGGGGGTACGGGGAGCCAGGACTTGACCATTAAAGAATTGGGAGGAGCAGGGACCATCATAGGCCTTGAAGAGAAACTAGACGGCTCCTACACCACCGTTATTCCGGGGGCCTTTGTTGATGGCAATACTGTGGGCAAAACCATCGATCAATATATTAACTCCNCAAAGAATGCACAAGCAGTTATATACAAGACAAAAAGTGCAGAAATCCCTGCTCCATATCTTGCTTCTTTTTCATCCAGAGGTCCTCAACAGATCAACCGCAACATCCTCAAGCCTGACTTGACTGCCCCGGGACTGGACATACTAGCTGCTTATTCCAAACTGGTAACAGTAACAGGGTACCCTCAAGACACCCGCCACGAAGTTTTTAATATAATATCAGGAACATCCATGGCATGTCCACATGCCATTGCAGCTGCTGCCTATGTTAAATCCTTCCACCCTGATTGGAGTCCTTCTGCTATTAAATCTGCCCTCATGACCACTGCAACTCCCATTAAAATCAGTGGAAATTTCACGGAGCTGGGAGCTGGGTCAGGACAGATTAGCCCAGTAAAAGCATTGCATCCTGGCCTACTTTATGACATTAGAATGAACTCCTATATTGCCTTCCTATGCAAGCAAGGNTACAACAGCACTGGCATTGGAATCCTTATTGGCAGCAAAGGTTTCAATTGCAGCAGCGTTAAGCCTGCACCAGGCACTGATGGTATCAACTACCCTACCATGCATATCCAGCTCCTCAGTGCCAGTTCCAGAATTTCTGCAGTTTTCTATAGGACTGTGACTAATGTAGGNTATGGAAATTCAACTTACAAGGCTAAAGTCACAGCACCCGANGGTTTTTCCGTGGAGGTCATCCCAGATACATTGCAGTTTAGTCATTTGCACCATCAACTGTCGTTTAAGGTTGTCCTGAAGGGGCCTCCAATGCCGAAGGATACACAGACATTAACTGCATCACTTGAATGGAATGACTCTAAACACAGTGTCAGAAGTCCAATAGTTGTCTTTAAGCCACAATCGTGATGGATATATTTCATAACTAGGAATTTAAGTCCAAGAGTTTTTTCTTTTCATATTGTGTACATTTAAGTTAGTTATTTGCTTTAGCTTACTGAAAAAGAAATTTAGCTGCACTAATTATCAATTCATTTGGTACGAATGACCAACATTAAGTCATACATTACCCTGATCTAGCACTTCCTCTCCCA

Protein Sequence

>Glyur000007s00002888.1
MMISKKSKIDQSTRVSTIIKPNVKNNNNNNNPRAGQRVLQAEALLQHQQQQPNECPTKLFVFGDSYADTGNIRKGLANSWKDPYGVTFPGKPAGRFSDGRVLTDYIAKYLKVKSPVPYRMRKLMPQHLKYVKYGMNFAFGGTGVFETLNPGPNMTTQIDLFQQVIRDKVYTASDLTNSVALVSVAGNDYTRYMATNGSAEGLPSFVAAVVNQTTTNLIRXRGLGVKKVVVNGLQPVGCLPQMTASSSFQRCNDTSDNLALLHNNLLNQAVXRLNQQTTTNGHYNYSSPPFLVLNLYDSFMSVLNHPSTHNIQNQXKPCCVGVSSEYSCGSVGENNVKKYRVCEEPKSAFFWDQVHPTEAGWHAGSNQHERKPYIVYMGELPSARTYAVEQHHHNLLEAAIGDKQLARESKIHSYGKSFNGFVARLLPHEAKKLREKDNVVSVFPNTHRKLHTTRTWDFLGMPLNVKRNNNVESHIIVGVLDTGIWVDCPSFNDEGYGPPPRRWKGXCVTGANFTGCNNKVIGAKYFNLDPSGPTIENPSPVDDQGHGTHTASTAAGVAVKDASXYGIGKGTARGGVPSARIAMYKVCWSIGCSDMDMLAGFDEAIADGVNFISVSIGGPSRDFFSDPIAIGSFHAMRRGVLTSCSAGNDGPRPMSVENVAPWIMTVAASTVDRQYTTFVAFGDGNNTTMYPLTSGVLAANLSGDGYGNPSGCDYGTLSKDKVMGRIVYCVGGTGSQDLTIKELGGAGTIIGLEEKLDGSYTTVIPGAFVDGNTVGKTIDQYINSXKNAQAVIYKTKSAEIPAPYLASFSSRGPQQINRNILKPDLTAPGLDILAAYSKLVTVTGYPQDTRHEVFNIISGTSMACPHAIAAAAYVKSFHPDWSPSAIKSALMTTATPIKISGNFTELGAGSGQISPVKALHPGLLYDIRMNSYIAFLCKQGYNSTGIGILIGSKGFNCSSVKPAPGTDGINYPTMHIQLLSASSRISAVFYRTVTNVGYGNSTYKAKVTAPXGFSVEVIPDTLQFSHLHHQLSFKVVLKGPPMPKDTQTLTASLEWNDSKHSVRSPIVVFKPQS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	705194	716389	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004252 serine-type endopeptidase activity

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002888.1	PF00657.17	Lipase_GDSL	59	361	1.10E-14
Glyur000007s00002888.1	PF05922.11	Inhibitor_I9	373	451	1.40E-14
Glyur000007s00002888.1	PF00082.17	Peptidase_S8	476	910	2.80E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.331
SRR1783600	control	9.517
SRR1783602	moderate drought stress	7.937
SRR1811619	moderate drought stress	7.905

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.670
DRR006520	Root Summer glycyrrhizin high producing strain	11.530
DRR006521	Root Winter glycyrrhizin high producing strain	1.431
DRR006522	Root Winter glycyrrhizin high producing strain	1.324
DRR006523	Root Summer glycyrrhizin low producing strain	8.483
DRR006524	Root Summer glycyrrhizin low producing strain	8.704
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.158
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.217

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.013
SRR2868004	Drought Stress (root)	24.359
SRR2967015	Control (root)	24.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.782
SRR9715740	Leaf	1.587
SRR9715741	Leaf	2.189
SRR9715739	Root	6.739
SRR9715742	Root	14.669
SRR9715743	Root	13.146

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.242
SRR8749028	MeJA induced 9h	1.837
SRR8749029	MeJA induced 9h	2.175
SRR8749030	Uninduced	0.774
SRR8749031	Uninduced	0.488
SRR8749032	Uninduced	1.611

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.193
SRR8400027	Control - Root	27.756