Gene detail information of Glyur000007s00002887 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52790.1 | 7.00E-29 | peptidoglycan-binding LysM domain-containing protein |
| NR | XP_006594209.1 | 1.03E-52 | PREDICTED: uncharacterized protein LOC100786697 [Glycine max] |
| trEMBL | tr|I1LZI6|I1LZI6_SOYBN | 4.00E-53 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G21940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 701875 | 702171 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002887.1 | PF01476.15 | LysM | 51 | 92 | 1.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.657 |
| SRR1783600 | control | 2.541 |
| SRR1783602 | moderate drought stress | 1.771 |
| SRR1811619 | moderate drought stress | 2.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.005 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.747 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.376 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.367 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.355 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.706 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.291 |
| SRR2868004 | Drought Stress (root) | 18.875 |
| SRR2967015 | Control (root) | 12.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.424 |
| SRR9715740 | Leaf | 3.183 |
| SRR9715741 | Leaf | 0.910 |
| SRR9715739 | Root | 1.200 |
| SRR9715742 | Root | 4.789 |
| SRR9715743 | Root | 6.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.228 |
| SRR8749028 | MeJA induced 9h | 9.290 |
| SRR8749029 | MeJA induced 9h | 5.347 |
| SRR8749030 | Uninduced | 6.680 |
| SRR8749031 | Uninduced | 4.508 |
| SRR8749032 | Uninduced | 2.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.451 |
| SRR8400027 | Control - Root | 12.882 |