Gene detail information of Glyur000007s00002886 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36310.1 | 2.00E-157 | uridine-ribohydrolase 1 |
| NR | XP_004494158.1 | 0 | PREDICTED: uridine nucleosidase 1-like [Cicer arietinum] |
| COG | YP_001340398.1 | 2.00E-74 | inosine/uridine-preferring nucleoside hydrolase [Marinomonas sp. MWYL1] |
| Swissprot | tr|Q9SJM7|URH1_ARATH | 0 | Uridine nucleosidase 1 |
| trEMBL | tr|V7CZP6|V7CZP6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW34878.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 694981 | 698836 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01240 | URH1 | EC:3.2.2.3 | Pyrimidine metabolism | map00240 |
| Nicotinate and nicotinamide metabolism | map00760 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002886.1 | PF01156.14 | IU_nuc_hydro | 74 | 383 | 5.00E-83 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.560 |
| SRR1783600 | control | 7.579 |
| SRR1783602 | moderate drought stress | 7.351 |
| SRR1811619 | moderate drought stress | 7.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.657 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.810 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.779 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.422 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 24.647 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.306 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.318 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 44.057 |
| SRR2868004 | Drought Stress (root) | 51.101 |
| SRR2967015 | Control (root) | 59.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.273 |
| SRR9715740 | Leaf | 14.202 |
| SRR9715741 | Leaf | 18.326 |
| SRR9715739 | Root | 8.626 |
| SRR9715742 | Root | 7.806 |
| SRR9715743 | Root | 7.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.957 |
| SRR8749028 | MeJA induced 9h | 47.647 |
| SRR8749029 | MeJA induced 9h | 55.207 |
| SRR8749030 | Uninduced | 69.011 |
| SRR8749031 | Uninduced | 121.304 |
| SRR8749032 | Uninduced | 104.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.203 |
| SRR8400027 | Control - Root | 22.985 |