Gene detail

Gene detail information of Glyur000007s00002885

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59310.1	1.00E-69	Eukaryotic protein of unknown function (DUF914)
NR	XP_003625790.1	3.05E-165	Solute carrier family 35 member F1 [Medicago truncatula]
trEMBL	tr\|G7L611\|G7L611_MEDTR	1.00E-165	UAA transporter family protein {ECO:0000313\|EMBL:AES82008.1}

Sequence

Transcript Sequence

>Glyur000007s00002885.1
AAAAAAAATATGTTAATCATAAAAATTCGAATGTGTTATAAGAATTTTTTTTATTTTTTATGTTTCACTTATATAAGTATTATCAGGACATGTACGGAATATTTATTATTTGACCGACAAAATAAACTTATACCACCACAACTCCACGAGAACACACGAACTATACAGCATTTTCCCTCCACGCGGTTCCCACCATTCAAATAAACTCAAGAACGGTAGCTGTATCCATGTATCCAAACTTCAAACTCCATGTTTCATGATAATTCAACTTTTTGATATGTNAAATAACGATAATATCCTGCCACTGTTAATTCACGCTCCATTGTTGTTCTTTAAGATGACAAAAAGATTAAAAAAAAATATTTAAAGAGAATGTAACAAAGAAAGAAAAGGTTGAAGTTGTTTTTCAATAATGGATTGGAGTGCGATGAGAAGGTGCTGGAGCAGCCCTGCAACTCTAAGAGTCCTTGGCCTACTCTTGCTTGGTCAACTAGTTTCTTTCACCGCTGCTCTCATGAGCCTCACTTCTTCTCTCATAGCCACACTTGGTGTTGATGCCCCCTTGACTCAGAGCCTGTTTACCTATGCATCTTTAGCTTTGGTGTATGGAAGCATAATGCTTTATAGGCATAAAAAACCTCTGGTTTCTTGGTATTGGTATTTACCATTAGGTTTTGCTGATGTTCAGGGGAATTATTTGGTTAACAAAGCATTTCAGTATACGTCCATTACAAGTGTAACATTACTCGACTGTTGGACAATACCTTGGGCAATTATACTCACATGGATCTTCCTAGGCACACGATATTCCCTATGGCAGTTAAGTGGCGGAGCCATCTGTGTGCTGGGTCTCTGTTTAGTCCTACTCTCTGACACTTGGGATGGTGGTGGAGTTTTCTATGCAATAAGCAATGTTGGTGAGGAATTTTGTGTTAAGAAAAAGGATCGGGTTGAAGTAGTTTCCATGATTGGTGTTTATGGATTCTTAGTGACCATTGTTGAAGTATCTTTTATAGAATTGAAGACTCTGGAATCAGTCAAATGGTCTGCAGATATTGTACTTGCTTTTGCCGGCTATGCCTTGTCAAGCTTCATGTTTTACACACTTGCTCCTTTTGTTTTAAAGTTGAGCGGAGCAGCAATGTTTAATCTTTCTCTTCTAACATCTGATTTGTGGGCAGTGGTTTTTAAAATATTCCTTTATCACCAGAAGGTGGACTGGTTGTACTTCCTTTCTTTTGCAATTGTGGATATTGGGCTCATCATGTATTCTGCAACAGAGAAGAATTATGTTCCTGCATCAGCTACAGAGGATGGAAATCTGAACACAGAATACCAAGTACTTAATGATGAAATCACAGCATCTGGAGCTGATTCTTTTGCTTCGTGAGGGAAATCACAATNTTGCAATTGGAAGGGGAGAATACAATACAATCATGAAAGTATTGACCTCAAATATATATTCAATATTTTCTTTTCTTGTAAGGAATATCCTTGACCCCAGAAGGGAAATTTNATGTGGGAATATGCCATGTGCATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	682740	687150	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002885.1	PF06027.7	DUF914	16	305	7.30E-86

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.632
SRR1783600	control	1.512
SRR1783602	moderate drought stress	1.030
SRR1811619	moderate drought stress	0.973

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.278
DRR006520	Root Summer glycyrrhizin high producing strain	1.477
DRR006521	Root Winter glycyrrhizin high producing strain	2.847
DRR006522	Root Winter glycyrrhizin high producing strain	2.372
DRR006523	Root Summer glycyrrhizin low producing strain	1.328
DRR006524	Root Summer glycyrrhizin low producing strain	1.285
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.191
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.931

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.973
SRR2868004	Drought Stress (root)	4.127
SRR2967015	Control (root)	7.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.917
SRR9715740	Leaf	2.124
SRR9715741	Leaf	2.219
SRR9715739	Root	0.800
SRR9715742	Root	1.953
SRR9715743	Root	1.493

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.540
SRR8749028	MeJA induced 9h	12.204
SRR8749029	MeJA induced 9h	14.433
SRR8749030	Uninduced	18.653
SRR8749031	Uninduced	20.969
SRR8749032	Uninduced	25.724

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.868
SRR8400027	Control - Root	5.391