Gene detail

Gene detail information of Glyur000007s00002881

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52780.1	9.00E-159	Purple acid phosphatases superfamily protein
NR	XP_003520692.1	0	PREDICTED: probable purple acid phosphatase 20-like isoform X1 [Glycine max]
COG	YP_430017.1	2.00E-18	metallophosphoesterase [Moorella thermoacetica ATCC 39073]
Swissprot	tr\|Q9LXI7\|PPA20_ARATH	0	Probable purple acid phosphatase 20 (Precursor)
trEMBL	tr\|K7KG05\|K7KG05_SOYBN	0	Purple acid phosphatase {ECO:0000256\|RuleBase:RU361203}

Sequence

Transcript Sequence

>Glyur000007s00002881.1
GCCGAATGAGAACATTGGTTTGGGCCTTGCAGGTACATATATCACAAGTGGGCCAAGAGAAGATGAGAATATCGTGGATCACAGACAGCCCAACCGCTGCAAAAGTGGAGTACGGTCCATCTCCTTCGGCAAACGCGTTCTCTGCCACCGGGACTACCTCCTCGTACCATTATATCACCTACGAGTCCGGTGAAATTCACGACGTCGTCATTGGTCCCCTCAAGCCCCAAACGATCTATTACTACCGTTTGGGTGACTCACCCTCATCCCAAACATACAATTTCACCACCCCACCCTCTCAATTTCCAATCAAGTTTGCAGTAGTTGGAGATTTGGGACAGACAGATTGGACTAGGTCGACGTTGGAGCATATAGGACAATCAAACTACGATATGTTGCTATTACCAGGGGACCTATCCTACGCAGACTTCATCCAAAATCTATGGGACTCCTATGGTCGTTTGGTGGAGCCATTAGCAAGCCAGCGTCCATGGATGGTCACGCAAGGGAACCACGACGTCGAGAAGATTCCGATCATCCACAAAGAGCCGTTCACGGCTTACAATGCCAGGTGGAGAATGCCGTTCGAAGAGAGTGGATCAGACTCTAACCTCTACTATTCCTTTGACGTGGCTGGGGTCCACGTCATCATGCTTGGCTCCTACACCGACTTCGACCCTGATTCCTCACAGTACAAGTGGCTTCAAGGGGACCTGCAGAAGATAAACAGGGGAAACACTCCTTGGGTGGTGGTTCTGATTCACGCCCCGTGGTACAACTCCAACGAAGCTCATCAGGGTGAGCCTGAATCCGTTTCCNTGAAGGCTGCCATGGAAGATTTGCTCTATCAGGCCCGTGTTGATGTTGTTTTTGCAGGGCATGTTCATGCCTATGAACGCTCTACACGGGTTTACAAAGACAAAGGTGACACTTGTGGTCCTTTGTTTATTAACATTGGGGATGGGGGAAACCGTGAAGGCCTTGCCACCAAGTACATAGACCCCAAGCCGGAGATATCAATATTCAGGGAAGCTAGCTTTGGACATGGGACATTAGAGGTGGTTAATGCAACGCATGCGTTTTGGACTTGGCATAAGAATGATAATGAGGAACCGGTTGTTAGTGACTCTGTTTGGGTTACAAGCCTCTCCTCTAATCCCGCTTGTAAAAAGTGANGATACTTTGGAAAATAATTAATCTCCTAGCTACCTGCCTGAATGCCACGGCAGGATGGTAGTTAAAAGGTGTTGTTTTCGTTAATTATTGGTGATCATTCTGAAGAAATAATATTATAGAGATTTAGATTCTTAAGCTGTAGCTAGGCAAAACTAGTATACATAATAATGGCGATTGTTTCTGTTATCTGATTCAGTTTACAGAATATTTTCTCAGGTAAATGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	647363	649281	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003993 acid phosphatase activity

GO:0016787 hydrolase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002881.1	PF00149.23	Metallophos	102	296	5.30E-22
Glyur000007s00002881.1	PF14008.1	Metallophos_C	311	376	6.00E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.923
SRR1783600	control	7.880
SRR1783602	moderate drought stress	6.317
SRR1811619	moderate drought stress	6.349

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.770
DRR006520	Root Summer glycyrrhizin high producing strain	16.834
DRR006521	Root Winter glycyrrhizin high producing strain	8.735
DRR006522	Root Winter glycyrrhizin high producing strain	8.281
DRR006523	Root Summer glycyrrhizin low producing strain	23.412
DRR006524	Root Summer glycyrrhizin low producing strain	23.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.397
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.459

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.948
SRR2868004	Drought Stress (root)	4.901
SRR2967015	Control (root)	6.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.575
SRR9715740	Leaf	1.462
SRR9715741	Leaf	1.853
SRR9715739	Root	7.773
SRR9715742	Root	6.441
SRR9715743	Root	5.048

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.395
SRR8749028	MeJA induced 9h	81.977
SRR8749029	MeJA induced 9h	59.345
SRR8749030	Uninduced	119.496
SRR8749031	Uninduced	44.452
SRR8749032	Uninduced	101.829

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.828
SRR8400027	Control - Root	8.168