Gene detail information of Glyur000007s00002876 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27550.1 | 5.00E-75 | centroradialis |
| NR | ABP73384.1 | 9.04E-114 | TFL1 [Vicia faba] |
| Swissprot | tr|Q9ZNV5|CEN_ARATH | 1.00E-94 | Protein CENTRORADIALIS-like |
| trEMBL | tr|A9LDB9|A9LDB9_VICFA | 3.00E-114 | TFL1 {ECO:0000313|EMBL:ABP73384.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00007 | 601985 | 603451 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000007s00002876.1 | PF01161.15 | PBP | 28 | 163 | 1.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.116 |
| SRR1783600 | control | 51.971 |
| SRR1783602 | moderate drought stress | 13.128 |
| SRR1811619 | moderate drought stress | 13.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.195 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.203 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.085 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.372 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.371 |
| SRR2868004 | Drought Stress (root) | 44.732 |
| SRR2967015 | Control (root) | 60.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.801 |
| SRR9715740 | Leaf | 0.960 |
| SRR9715741 | Leaf | 0.388 |
| SRR9715739 | Root | 1.872 |
| SRR9715742 | Root | 4.835 |
| SRR9715743 | Root | 4.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 104.081 |
| SRR8400027 | Control - Root | 54.279 |