Gene detail

Gene detail information of Glyur000007s00002862

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G10130.1	2.00E-89	SOUL heme-binding family protein
NR	XP_003554437.1	4.52E-177	PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like isoform X1 [Glycine max]
COG	YP_943164.1	1.00E-27	SOUL heme-binding protein [Psychromonas ingrahamii 37]
Swissprot	tr\|Q9SR77\|HBPL1_ARATH	6.00E-121	Heme-binding-like protein At3g10130, chloroplastic (Precursor)
trEMBL	tr\|I1NAN6\|I1NAN6_SOYBN	2.00E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G38010.1}

Sequence

Transcript Sequence

>Glyur000007s00002862.1
TAAAAAGATGAAAAGATAAAAAAAATTTCCTCACTTGATTGATTGAATAAAAAATAAAATTTATAATTTTTTTAGGTTCAGAAATTAATTTCTGAAATACTAGAATTTTGGAATTTGGAATCCAAATTTGAGAAGTGCGTCNAAACAATCCCAAGTGTAGTCGTGGTTAGCGGTAAAATATCTGAAAAGGGGACCATGCGGTGCCGGGGAAAAATCGTAACACCCAGTGGACCAAAATGAAATCGCGCATAGACAACAGAAATTCNAAAGCCTGAAGAAACAAAATGCTTCCTCTCCCACTTTGCAACCCTTCTTTTTCTCTGCAACCGATCACCGTGGCCTCGATTCCAGGAAAACCTAACAAGACCGTCTCCATCACCAACTCTGCGTCCTCCAGCGACAGAATCAGCAGCACCCGGCGAAGAACCATGTCAGCCTTCGAAGCCCGAACCTCACTCATTTTCGCCCTTGCCTCTCAAGCCACCTCACTCTCGCAGCGACTTGTTGCGGACGTGGCTACTGAGACTGCAAAATACTTGTTTCCGAAAAGATTTGAAAGCCACACTCTTGAGGAGGCGTTGATGTCAGTTCCGGACCTTGAGACTGTCAAGTTTAAAGTTCTAGAGAGAAGGGACCAGTATGAGATCAGGGAAGTTGAGCCTTACTTTGTAGCAGAGACTACAATGCCTGGGAAGAGTGGGTTTGATTTCAGCGGTTCTTCTCAGTCATTTAATGTCCTAGCTGCATACCTTTTTGGTAAGAATACAATGAAGGAGAAAATGGAGATGACTACGCCTGTTTTTACCAGTAAGAATAAATCTGATGGGGTTAAAATGGATATGACAACNCCTGTGTTAACAACAAAGATGGAAGATCNAGATAAGTGGAAAATGTCTTTTGTCATGCCTTCAAAGTATGGTGCTAACTTGCCACTGCCTAAAGATTCCTCCGTGAGGATTAAAGAGGTGCCCAGAAAAATAGTTGCTGTAGTTTCGTTTTCAGGTTTTGTGAATGATGATGAAGTCAAGCAGCGTGAACTGAAANTACGAGAAGCTTTGAAAAATGACAGACAGTTTAAAATTAAAGAGGGAACTTCAGTTGAAATTGCACAGTATAATCCCCCATTNACTCTTCCATTTCAACGCCGTAATGAGATTGCATTGGAGGTGGAATGGAAAAATAAATAGGAAAAATATTTTCCAATTTACAGTCTTGACGTACTTTTGATTTTTCACAATTTCTACTGTAAGCTGCAAAAGTTAACCGGTTCATTATCATGAATCAGACTCCAATACAAAATGTTTTGTACTCATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00007	536843	540325	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000007s00002862.1	PF04832.7	SOUL	105	296	1.30E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.654
SRR1783600	control	20.793
SRR1783602	moderate drought stress	28.845
SRR1811619	moderate drought stress	28.674

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.339
DRR006520	Root Summer glycyrrhizin high producing strain	25.303
DRR006521	Root Winter glycyrrhizin high producing strain	13.556
DRR006522	Root Winter glycyrrhizin high producing strain	12.854
DRR006523	Root Summer glycyrrhizin low producing strain	34.102
DRR006524	Root Summer glycyrrhizin low producing strain	34.062
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.229
DRR006526	Leaf Summer glycyrrhizin high producing strain	52.774

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.761
SRR2868004	Drought Stress (root)	13.695
SRR2967015	Control (root)	15.966

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.070
SRR9715740	Leaf	34.052
SRR9715741	Leaf	23.252
SRR9715739	Root	3.625
SRR9715742	Root	8.003
SRR9715743	Root	7.537

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.094
SRR8749028	MeJA induced 9h	7.807
SRR8749029	MeJA induced 9h	8.282
SRR8749030	Uninduced	5.481
SRR8749031	Uninduced	7.979
SRR8749032	Uninduced	4.224

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.556
SRR8400027	Control - Root	14.857